miRNA display CGI


Results 81 - 100 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5165 3' -54.3 NC_001798.1 + 69281 0.72 0.683183
Target:  5'- gGCGGGUCAGGUGAuaGCGGggGGCGcCGg -3'
miRNA:   3'- -CGCUCGGUCCGUU--UGCCauUCGUcGC- -5'
5165 3' -54.3 NC_001798.1 + 69182 0.79 0.340275
Target:  5'- gGCGGGCCAGGUggGggagguCGGUGGGguGCc -3'
miRNA:   3'- -CGCUCGGUCCGuuU------GCCAUUCguCGc -5'
5165 3' -54.3 NC_001798.1 + 68471 0.68 0.89602
Target:  5'- uGCGAGCuCGcGGCcgGGACGGcGAGCGGa- -3'
miRNA:   3'- -CGCUCG-GU-CCG--UUUGCCaUUCGUCgc -5'
5165 3' -54.3 NC_001798.1 + 67702 0.72 0.693443
Target:  5'- gGCGGGCCcguGGgAGGCGGggUGGGCGGUa -3'
miRNA:   3'- -CGCUCGGu--CCgUUUGCC--AUUCGUCGc -5'
5165 3' -54.3 NC_001798.1 + 66621 0.67 0.926229
Target:  5'- aUGAGCgCGGGCucGCGGUcgaCGGCGu -3'
miRNA:   3'- cGCUCG-GUCCGuuUGCCAuucGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 66367 0.67 0.926229
Target:  5'- uGCGAuaCAGGCGGGCGGaccGCcGCa -3'
miRNA:   3'- -CGCUcgGUCCGUUUGCCauuCGuCGc -5'
5165 3' -54.3 NC_001798.1 + 64723 0.73 0.621031
Target:  5'- cUGGGCCgAGGC-GGCGGUGGGCAugaGCGc -3'
miRNA:   3'- cGCUCGG-UCCGuUUGCCAUUCGU---CGC- -5'
5165 3' -54.3 NC_001798.1 + 64141 0.66 0.950315
Target:  5'- aGgGGGUCGGuGCucGCGGggGAGaCGGCGg -3'
miRNA:   3'- -CgCUCGGUC-CGuuUGCCa-UUC-GUCGC- -5'
5165 3' -54.3 NC_001798.1 + 60746 0.66 0.950315
Target:  5'- aGCGAGUCcaaaAGGCucguGCG--AAGCGGCGc -3'
miRNA:   3'- -CGCUCGG----UCCGuu--UGCcaUUCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 59462 0.66 0.954409
Target:  5'- cGCGuGcCCGGGC--GCGGUGAGgcguuCGGCc -3'
miRNA:   3'- -CGCuC-GGUCCGuuUGCCAUUC-----GUCGc -5'
5165 3' -54.3 NC_001798.1 + 58984 0.76 0.479764
Target:  5'- gGCG-GCCGGGCGAACGcGggGGgGGCGc -3'
miRNA:   3'- -CGCuCGGUCCGUUUGC-CauUCgUCGC- -5'
5165 3' -54.3 NC_001798.1 + 57389 0.74 0.589957
Target:  5'- cGCGAGCCguaccGGGCcAGCGGgucGUGGCGg -3'
miRNA:   3'- -CGCUCGG-----UCCGuUUGCCauuCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 54020 0.67 0.931535
Target:  5'- uGgGAGaCC-GGCAAGCGc--AGCGGCGg -3'
miRNA:   3'- -CgCUC-GGuCCGUUUGCcauUCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 53924 0.67 0.914877
Target:  5'- cGCGGGCCcagcGGCAccACGGgcucgauGCAGUGc -3'
miRNA:   3'- -CGCUCGGu---CCGUu-UGCCauu----CGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 51479 0.66 0.945984
Target:  5'- cGCGuGUCGGGCccgGAGCuGcAGGCGGCa -3'
miRNA:   3'- -CGCuCGGUCCG---UUUGcCaUUCGUCGc -5'
5165 3' -54.3 NC_001798.1 + 51332 0.67 0.914877
Target:  5'- uUGGGgCGGGUggGCGGUucGCGGg- -3'
miRNA:   3'- cGCUCgGUCCGuuUGCCAuuCGUCgc -5'
5165 3' -54.3 NC_001798.1 + 49374 0.7 0.80971
Target:  5'- aCGAgGCCAuGGCGcaguuuuuccGCGGUGAGCuGCGg -3'
miRNA:   3'- cGCU-CGGU-CCGUu---------UGCCAUUCGuCGC- -5'
5165 3' -54.3 NC_001798.1 + 48672 0.68 0.882259
Target:  5'- cCGAGCgCGGG-GGACGGgccgcccgGAGCGGUGg -3'
miRNA:   3'- cGCUCG-GUCCgUUUGCCa-------UUCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 44399 0.69 0.81854
Target:  5'- cGUGGGCCGGgaGCAAugGGgucccGCGGCc -3'
miRNA:   3'- -CGCUCGGUC--CGUUugCCauu--CGUCGc -5'
5165 3' -54.3 NC_001798.1 + 43743 0.66 0.951981
Target:  5'- aGUGGGCCAGGUAGauGuacguaaugaauuccCGGUcggacacgcgcAGGCAGCu -3'
miRNA:   3'- -CGCUCGGUCCGUU--U---------------GCCA-----------UUCGUCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.