miRNA display CGI


Results 41 - 60 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5165 3' -54.3 NC_001798.1 + 27796 0.66 0.954409
Target:  5'- gGUGAguucGCUAGGCAAgcACGGacuGGCGGUu -3'
miRNA:   3'- -CGCU----CGGUCCGUU--UGCCau-UCGUCGc -5'
5165 3' -54.3 NC_001798.1 + 135257 0.66 0.954409
Target:  5'- gGCGGGCCuggaaAGGCuGGACGcgcuGGUGGCGg -3'
miRNA:   3'- -CGCUCGG-----UCCG-UUUGCcau-UCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 151160 0.66 0.954409
Target:  5'- cCGuGCCGGGCcacgGGGgGGUGGGCgacagGGCGc -3'
miRNA:   3'- cGCuCGGUCCG----UUUgCCAUUCG-----UCGC- -5'
5165 3' -54.3 NC_001798.1 + 151614 0.66 0.954409
Target:  5'- cGgGGGCCGGGCcGGgGGcguGGCcGCGu -3'
miRNA:   3'- -CgCUCGGUCCGuUUgCCau-UCGuCGC- -5'
5165 3' -54.3 NC_001798.1 + 59462 0.66 0.954409
Target:  5'- cGCGuGcCCGGGC--GCGGUGAGgcguuCGGCc -3'
miRNA:   3'- -CGCuC-GGUCCGuuUGCCAUUC-----GUCGc -5'
5165 3' -54.3 NC_001798.1 + 75122 0.66 0.945984
Target:  5'- cGC-AGuCCGGGCA---GGgcGGCGGCGa -3'
miRNA:   3'- -CGcUC-GGUCCGUuugCCauUCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 70296 0.66 0.945984
Target:  5'- gGCGuuucuguuGUCGGGCGcGGCGGUcGGCccGGCGg -3'
miRNA:   3'- -CGCu-------CGGUCCGU-UUGCCAuUCG--UCGC- -5'
5165 3' -54.3 NC_001798.1 + 34559 0.66 0.936596
Target:  5'- -gGAGCCugggucccccGGCGGACGGcucacGCGGCGc -3'
miRNA:   3'- cgCUCGGu---------CCGUUUGCCauu--CGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 31348 0.66 0.939993
Target:  5'- gGCGcGCgCAGGCGcGGCGgGUGggcgaagacgccgcGGCGGCGg -3'
miRNA:   3'- -CGCuCG-GUCCGU-UUGC-CAU--------------UCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 15346 0.66 0.941412
Target:  5'- aGCGGG--GGGCGAgGCGGUGAGgGGgGa -3'
miRNA:   3'- -CGCUCggUCCGUU-UGCCAUUCgUCgC- -5'
5165 3' -54.3 NC_001798.1 + 106694 0.66 0.941412
Target:  5'- uGCGAG-CGGGCcuaccGACGGccgcGCGGCGu -3'
miRNA:   3'- -CGCUCgGUCCGu----UUGCCauu-CGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 107418 0.66 0.941412
Target:  5'- -gGGGCC-GGCuGACGGgggucgccGCGGCGa -3'
miRNA:   3'- cgCUCGGuCCGuUUGCCauu-----CGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 113115 0.66 0.941412
Target:  5'- cGCGAGCU-GGUAGACG--AGGCcGCGu -3'
miRNA:   3'- -CGCUCGGuCCGUUUGCcaUUCGuCGC- -5'
5165 3' -54.3 NC_001798.1 + 112439 0.66 0.94327
Target:  5'- gGCGAGCCacgGGGCGGACuuGGgggggggaauagugGGGUGGUGg -3'
miRNA:   3'- -CGCUCGG---UCCGUUUG--CCa-------------UUCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 96958 0.66 0.945089
Target:  5'- uGCuGGaCCAGGCGcuggcgcggaccGCGGcGGGCGGCGg -3'
miRNA:   3'- -CGcUC-GGUCCGUu-----------UGCCaUUCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 2325 0.66 0.945984
Target:  5'- -aGGGCCGGGCGccacggcGCGGggAAG-AGCGg -3'
miRNA:   3'- cgCUCGGUCCGUu------UGCCa-UUCgUCGC- -5'
5165 3' -54.3 NC_001798.1 + 29632 0.66 0.945984
Target:  5'- uCGGGCCGcauucgcaccccGGCAcugcgagcGACGG--AGCGGCGg -3'
miRNA:   3'- cGCUCGGU------------CCGU--------UUGCCauUCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 153437 0.66 0.945984
Target:  5'- uCGGGCCAGGCGcGCGGccgucucccAGGCcaccagauGGCGc -3'
miRNA:   3'- cGCUCGGUCCGUuUGCCa--------UUCG--------UCGC- -5'
5165 3' -54.3 NC_001798.1 + 22680 0.66 0.945984
Target:  5'- cCG-GUCggAGGCGAuguCGGcgGAGCAGCGg -3'
miRNA:   3'- cGCuCGG--UCCGUUu--GCCa-UUCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 51479 0.66 0.945984
Target:  5'- cGCGuGUCGGGCccgGAGCuGcAGGCGGCa -3'
miRNA:   3'- -CGCuCGGUCCG---UUUGcCaUUCGUCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.