miRNA display CGI


Results 121 - 140 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5165 3' -54.3 NC_001798.1 + 23659 0.67 0.902547
Target:  5'- aGCGccGCCGGGCccgcgcGGCGGUGgccGGCcGCGa -3'
miRNA:   3'- -CGCu-CGGUCCGu-----UUGCCAU---UCGuCGC- -5'
5165 3' -54.3 NC_001798.1 + 150384 0.68 0.898003
Target:  5'- cGCGGGCCcGGCcgcguccgcgcucgcAGACaccacggGGgcGGCGGCGg -3'
miRNA:   3'- -CGCUCGGuCCG---------------UUUG-------CCauUCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 2258 0.67 0.914877
Target:  5'- cGCGccGCCGGG-GGGCGG--GGCGGCGc -3'
miRNA:   3'- -CGCu-CGGUCCgUUUGCCauUCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 10885 0.67 0.914877
Target:  5'- cGCGAGCCAuguucggguGGCAGGagccguCGGUcgGGGCAGa- -3'
miRNA:   3'- -CGCUCGGU---------CCGUUU------GCCA--UUCGUCgc -5'
5165 3' -54.3 NC_001798.1 + 27527 0.67 0.914877
Target:  5'- cGCGGGa-AGGCAGccccgcggcgcGCGGggggagGGGCGGCGc -3'
miRNA:   3'- -CGCUCggUCCGUU-----------UGCCa-----UUCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 54020 0.67 0.931535
Target:  5'- uGgGAGaCC-GGCAAGCGc--AGCGGCGg -3'
miRNA:   3'- -CgCUC-GGuCCGUUUGCcauUCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 97565 0.67 0.926229
Target:  5'- cGCGAGCgAGG---ACGGgGAGC-GCGg -3'
miRNA:   3'- -CGCUCGgUCCguuUGCCaUUCGuCGC- -5'
5165 3' -54.3 NC_001798.1 + 34958 0.67 0.926229
Target:  5'- cGCGGcGCCGGaGgGGGCGGccgccGAGguGCGg -3'
miRNA:   3'- -CGCU-CGGUC-CgUUUGCCa----UUCguCGC- -5'
5165 3' -54.3 NC_001798.1 + 66621 0.67 0.926229
Target:  5'- aUGAGCgCGGGCucGCGGUcgaCGGCGu -3'
miRNA:   3'- cGCUCG-GUCCGuuUGCCAuucGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 66367 0.67 0.926229
Target:  5'- uGCGAuaCAGGCGGGCGGaccGCcGCa -3'
miRNA:   3'- -CGCUcgGUCCGUUUGCCauuCGuCGc -5'
5165 3' -54.3 NC_001798.1 + 31040 0.67 0.926229
Target:  5'- cGgGGGUCGGGCGGG-GGUcGGGCGGgGg -3'
miRNA:   3'- -CgCUCGGUCCGUUUgCCA-UUCGUCgC- -5'
5165 3' -54.3 NC_001798.1 + 31007 0.67 0.926229
Target:  5'- cGgGGGUCGGGCGGG-GGUcGGGCGGgGg -3'
miRNA:   3'- -CgCUCGGUCCGUUUgCCA-UUCGUCgC- -5'
5165 3' -54.3 NC_001798.1 + 30974 0.67 0.926229
Target:  5'- cGgGGGUCGGGCGGG-GGUcGGGCGGgGg -3'
miRNA:   3'- -CgCUCGGUCCGUUUgCCA-UUCGUCgC- -5'
5165 3' -54.3 NC_001798.1 + 15040 0.67 0.926229
Target:  5'- cGgGAGCgugGGGCGGAUGGgcccgGGGCGcGCGg -3'
miRNA:   3'- -CgCUCGg--UCCGUUUGCCa----UUCGU-CGC- -5'
5165 3' -54.3 NC_001798.1 + 4049 0.67 0.922926
Target:  5'- cGCGGGCCcGGCGGcgcuccaggcggcccGCGGUcgccGCGGgGg -3'
miRNA:   3'- -CGCUCGGuCCGUU---------------UGCCAuu--CGUCgC- -5'
5165 3' -54.3 NC_001798.1 + 152291 0.67 0.920676
Target:  5'- aUGAGCCGGGguAG-GGUAgacucgagacGGCGGCc -3'
miRNA:   3'- cGCUCGGUCCguUUgCCAU----------UCGUCGc -5'
5165 3' -54.3 NC_001798.1 + 1793 0.67 0.920676
Target:  5'- cGCaGGCCAGGUAGGCGugcuGCcGCGa -3'
miRNA:   3'- -CGcUCGGUCCGUUUGCcauuCGuCGC- -5'
5165 3' -54.3 NC_001798.1 + 97756 0.67 0.920676
Target:  5'- uGCGGGUCAGcGUccACGGcGAGguGCu -3'
miRNA:   3'- -CGCUCGGUC-CGuuUGCCaUUCguCGc -5'
5165 3' -54.3 NC_001798.1 + 42477 0.67 0.918962
Target:  5'- aGgGAGCCgugcacaacguacgGGGCGGGgacCGGUAGGCAcacGCGc -3'
miRNA:   3'- -CgCUCGG--------------UCCGUUU---GCCAUUCGU---CGC- -5'
5165 3' -54.3 NC_001798.1 + 154282 0.67 0.914877
Target:  5'- uGCGcAGcCCGGGCcguguuGCGGgcccucuuaagGGGCGGCGg -3'
miRNA:   3'- -CGC-UC-GGUCCGuu----UGCCa----------UUCGUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.