Results 101 - 120 of 195 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5165 | 3' | -54.3 | NC_001798.1 | + | 126129 | 0.67 | 0.914877 |
Target: 5'- gGCGA-CCuGGCGGACGGauggaUGAGUccgGGCGa -3' miRNA: 3'- -CGCUcGGuCCGUUUGCC-----AUUCG---UCGC- -5' |
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5165 | 3' | -54.3 | NC_001798.1 | + | 53924 | 0.67 | 0.914877 |
Target: 5'- cGCGGGCCcagcGGCAccACGGgcucgauGCAGUGc -3' miRNA: 3'- -CGCUCGGu---CCGUu-UGCCauu----CGUCGC- -5' |
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5165 | 3' | -54.3 | NC_001798.1 | + | 51332 | 0.67 | 0.914877 |
Target: 5'- uUGGGgCGGGUggGCGGUucGCGGg- -3' miRNA: 3'- cGCUCgGUCCGuuUGCCAuuCGUCgc -5' |
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5165 | 3' | -54.3 | NC_001798.1 | + | 12502 | 0.67 | 0.914877 |
Target: 5'- aCGGGCCcagAGGUAcACGG-GAGCGGgGa -3' miRNA: 3'- cGCUCGG---UCCGUuUGCCaUUCGUCgC- -5' |
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5165 | 3' | -54.3 | NC_001798.1 | + | 2831 | 0.67 | 0.914877 |
Target: 5'- gGCGA-CCAGGCucACGGcgcgcacGGCGGCc -3' miRNA: 3'- -CGCUcGGUCCGuuUGCCau-----UCGUCGc -5' |
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5165 | 3' | -54.3 | NC_001798.1 | + | 4049 | 0.67 | 0.922926 |
Target: 5'- cGCGGGCCcGGCGGcgcuccaggcggcccGCGGUcgccGCGGgGg -3' miRNA: 3'- -CGCUCGGuCCGUU---------------UGCCAuu--CGUCgC- -5' |
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5165 | 3' | -54.3 | NC_001798.1 | + | 15040 | 0.67 | 0.926229 |
Target: 5'- cGgGAGCgugGGGCGGAUGGgcccgGGGCGcGCGg -3' miRNA: 3'- -CgCUCGg--UCCGUUUGCCa----UUCGU-CGC- -5' |
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5165 | 3' | -54.3 | NC_001798.1 | + | 110885 | 0.66 | 0.936596 |
Target: 5'- nGCGu-CCAGGUAcccGGCGGUucGCGuGCGg -3' miRNA: 3'- -CGCucGGUCCGU---UUGCCAuuCGU-CGC- -5' |
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5165 | 3' | -54.3 | NC_001798.1 | + | 2529 | 0.66 | 0.935104 |
Target: 5'- gGCGucGGCgGGGCGGggggcgcggcccccGCGGgagGGGCGGCc -3' miRNA: 3'- -CGC--UCGgUCCGUU--------------UGCCa--UUCGUCGc -5' |
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5165 | 3' | -54.3 | NC_001798.1 | + | 73835 | 0.67 | 0.931535 |
Target: 5'- -gGAGCCGGGgGGGuCGGUucguGCAuGCGc -3' miRNA: 3'- cgCUCGGUCCgUUU-GCCAuu--CGU-CGC- -5' |
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5165 | 3' | -54.3 | NC_001798.1 | + | 27302 | 0.67 | 0.931535 |
Target: 5'- cGCGAGCUcGGCGGGauggaggggaGGgaggGGGUGGCGg -3' miRNA: 3'- -CGCUCGGuCCGUUUg---------CCa---UUCGUCGC- -5' |
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5165 | 3' | -54.3 | NC_001798.1 | + | 1926 | 0.67 | 0.931535 |
Target: 5'- gGCGAagGCCAGGUcccGCGuGgacAGCAGCa -3' miRNA: 3'- -CGCU--CGGUCCGuu-UGC-Cau-UCGUCGc -5' |
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5165 | 3' | -54.3 | NC_001798.1 | + | 54020 | 0.67 | 0.931535 |
Target: 5'- uGgGAGaCC-GGCAAGCGc--AGCGGCGg -3' miRNA: 3'- -CgCUC-GGuCCGUUUGCcauUCGUCGC- -5' |
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5165 | 3' | -54.3 | NC_001798.1 | + | 97565 | 0.67 | 0.926229 |
Target: 5'- cGCGAGCgAGG---ACGGgGAGC-GCGg -3' miRNA: 3'- -CGCUCGgUCCguuUGCCaUUCGuCGC- -5' |
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5165 | 3' | -54.3 | NC_001798.1 | + | 34958 | 0.67 | 0.926229 |
Target: 5'- cGCGGcGCCGGaGgGGGCGGccgccGAGguGCGg -3' miRNA: 3'- -CGCU-CGGUC-CgUUUGCCa----UUCguCGC- -5' |
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5165 | 3' | -54.3 | NC_001798.1 | + | 66621 | 0.67 | 0.926229 |
Target: 5'- aUGAGCgCGGGCucGCGGUcgaCGGCGu -3' miRNA: 3'- cGCUCG-GUCCGuuUGCCAuucGUCGC- -5' |
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5165 | 3' | -54.3 | NC_001798.1 | + | 66367 | 0.67 | 0.926229 |
Target: 5'- uGCGAuaCAGGCGGGCGGaccGCcGCa -3' miRNA: 3'- -CGCUcgGUCCGUUUGCCauuCGuCGc -5' |
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5165 | 3' | -54.3 | NC_001798.1 | + | 31040 | 0.67 | 0.926229 |
Target: 5'- cGgGGGUCGGGCGGG-GGUcGGGCGGgGg -3' miRNA: 3'- -CgCUCGGUCCGUUUgCCA-UUCGUCgC- -5' |
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5165 | 3' | -54.3 | NC_001798.1 | + | 31007 | 0.67 | 0.926229 |
Target: 5'- cGgGGGUCGGGCGGG-GGUcGGGCGGgGg -3' miRNA: 3'- -CgCUCGGUCCGUUUgCCA-UUCGUCgC- -5' |
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5165 | 3' | -54.3 | NC_001798.1 | + | 30974 | 0.67 | 0.926229 |
Target: 5'- cGgGGGUCGGGCGGG-GGUcGGGCGGgGg -3' miRNA: 3'- -CgCUCGGUCCGUUUgCCA-UUCGUCgC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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