miRNA display CGI


Results 21 - 40 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5165 3' -54.3 NC_001798.1 + 97636 0.66 0.945984
Target:  5'- cGCGGGCCGccGCGGACGuGcggGAGCgccGGCGg -3'
miRNA:   3'- -CGCUCGGUc-CGUUUGC-Ca--UUCG---UCGC- -5'
5165 3' -54.3 NC_001798.1 + 96958 0.66 0.945089
Target:  5'- uGCuGGaCCAGGCGcuggcgcggaccGCGGcGGGCGGCGg -3'
miRNA:   3'- -CGcUC-GGUCCGUu-----------UGCCaUUCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 112439 0.66 0.94327
Target:  5'- gGCGAGCCacgGGGCGGACuuGGgggggggaauagugGGGUGGUGg -3'
miRNA:   3'- -CGCUCGG---UCCGUUUG--CCa-------------UUCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 15346 0.66 0.941412
Target:  5'- aGCGGG--GGGCGAgGCGGUGAGgGGgGa -3'
miRNA:   3'- -CGCUCggUCCGUU-UGCCAUUCgUCgC- -5'
5165 3' -54.3 NC_001798.1 + 106694 0.66 0.941412
Target:  5'- uGCGAG-CGGGCcuaccGACGGccgcGCGGCGu -3'
miRNA:   3'- -CGCUCgGUCCGu----UUGCCauu-CGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 107418 0.66 0.941412
Target:  5'- -gGGGCC-GGCuGACGGgggucgccGCGGCGa -3'
miRNA:   3'- cgCUCGGuCCGuUUGCCauu-----CGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 113115 0.66 0.941412
Target:  5'- cGCGAGCU-GGUAGACG--AGGCcGCGu -3'
miRNA:   3'- -CGCUCGGuCCGUUUGCcaUUCGuCGC- -5'
5165 3' -54.3 NC_001798.1 + 31348 0.66 0.939993
Target:  5'- gGCGcGCgCAGGCGcGGCGgGUGggcgaagacgccgcGGCGGCGg -3'
miRNA:   3'- -CGCuCG-GUCCGU-UUGC-CAU--------------UCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 110885 0.66 0.936596
Target:  5'- nGCGu-CCAGGUAcccGGCGGUucGCGuGCGg -3'
miRNA:   3'- -CGCucGGUCCGU---UUGCCAuuCGU-CGC- -5'
5165 3' -54.3 NC_001798.1 + 153718 0.66 0.936596
Target:  5'- gGCGcGCCAGGUAcuccgucgUGGUGcGCAGCc -3'
miRNA:   3'- -CGCuCGGUCCGUuu------GCCAUuCGUCGc -5'
5165 3' -54.3 NC_001798.1 + 3220 0.66 0.936596
Target:  5'- cGCGGcGCuCAGGCGccccagGGCGGcGAGCAcccccGCGg -3'
miRNA:   3'- -CGCU-CG-GUCCGU------UUGCCaUUCGU-----CGC- -5'
5165 3' -54.3 NC_001798.1 + 34559 0.66 0.936596
Target:  5'- -gGAGCCugggucccccGGCGGACGGcucacGCGGCGc -3'
miRNA:   3'- cgCUCGGu---------CCGUUUGCCauu--CGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 2529 0.66 0.935104
Target:  5'- gGCGucGGCgGGGCGGggggcgcggcccccGCGGgagGGGCGGCc -3'
miRNA:   3'- -CGC--UCGgUCCGUU--------------UGCCa--UUCGUCGc -5'
5165 3' -54.3 NC_001798.1 + 54020 0.67 0.931535
Target:  5'- uGgGAGaCC-GGCAAGCGc--AGCGGCGg -3'
miRNA:   3'- -CgCUC-GGuCCGUUUGCcauUCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 1926 0.67 0.931535
Target:  5'- gGCGAagGCCAGGUcccGCGuGgacAGCAGCa -3'
miRNA:   3'- -CGCU--CGGUCCGuu-UGC-Cau-UCGUCGc -5'
5165 3' -54.3 NC_001798.1 + 27302 0.67 0.931535
Target:  5'- cGCGAGCUcGGCGGGauggaggggaGGgaggGGGUGGCGg -3'
miRNA:   3'- -CGCUCGGuCCGUUUg---------CCa---UUCGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 73835 0.67 0.931535
Target:  5'- -gGAGCCGGGgGGGuCGGUucguGCAuGCGc -3'
miRNA:   3'- cgCUCGGUCCgUUU-GCCAuu--CGU-CGC- -5'
5165 3' -54.3 NC_001798.1 + 34958 0.67 0.926229
Target:  5'- cGCGGcGCCGGaGgGGGCGGccgccGAGguGCGg -3'
miRNA:   3'- -CGCU-CGGUC-CgUUUGCCa----UUCguCGC- -5'
5165 3' -54.3 NC_001798.1 + 66621 0.67 0.926229
Target:  5'- aUGAGCgCGGGCucGCGGUcgaCGGCGu -3'
miRNA:   3'- cGCUCG-GUCCGuuUGCCAuucGUCGC- -5'
5165 3' -54.3 NC_001798.1 + 66367 0.67 0.926229
Target:  5'- uGCGAuaCAGGCGGGCGGaccGCcGCa -3'
miRNA:   3'- -CGCUcgGUCCGUUUGCCauuCGuCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.