miRNA display CGI


Results 21 - 40 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5165 5' -63.4 NC_001798.1 + 39756 0.66 0.620696
Target:  5'- cCCCGuGCGGUUCcCG-GgGGgaAGCCGa -3'
miRNA:   3'- -GGGC-CGCCAAGcGCaCgCCggUCGGC- -5'
5165 5' -63.4 NC_001798.1 + 40007 0.66 0.620696
Target:  5'- aCUCGG-GGUcgUCGCG-GCGGCCcuCCu -3'
miRNA:   3'- -GGGCCgCCA--AGCGCaCGCCGGucGGc -5'
5165 5' -63.4 NC_001798.1 + 53124 0.66 0.620696
Target:  5'- uCCCuGCGGcuggCGCgGUGCcugacGCCGGCCa -3'
miRNA:   3'- -GGGcCGCCaa--GCG-CACGc----CGGUCGGc -5'
5165 5' -63.4 NC_001798.1 + 78264 0.66 0.618774
Target:  5'- gCUCGGCGGcgUGCcccuggaccugGCGGCC-GCCGc -3'
miRNA:   3'- -GGGCCGCCaaGCGca---------CGCCGGuCGGC- -5'
5165 5' -63.4 NC_001798.1 + 149632 0.66 0.611087
Target:  5'- cCCCgcgaugGGCaGGUagCGCGUGaGGCCGggcGCCGg -3'
miRNA:   3'- -GGG------CCG-CCAa-GCGCACgCCGGU---CGGC- -5'
5165 5' -63.4 NC_001798.1 + 134947 0.66 0.611087
Target:  5'- aCCUGguGCGGggCGCc-GCGGCCAcccauGCCGc -3'
miRNA:   3'- -GGGC--CGCCaaGCGcaCGCCGGU-----CGGC- -5'
5165 5' -63.4 NC_001798.1 + 22144 0.66 0.605328
Target:  5'- gCCGGCGGgggccaacgggaGCGcGgGGCCGGCa- -3'
miRNA:   3'- gGGCCGCCaag---------CGCaCgCCGGUCGgc -5'
5165 5' -63.4 NC_001798.1 + 7057 0.66 0.605328
Target:  5'- cCCCGGCccacccccaaaccccGGUUgG-G-GCGGgCAGCCGa -3'
miRNA:   3'- -GGGCCG---------------CCAAgCgCaCGCCgGUCGGC- -5'
5165 5' -63.4 NC_001798.1 + 85299 0.66 0.601492
Target:  5'- gCCGG-GGUcCGCccGCGGCCcGCCc -3'
miRNA:   3'- gGGCCgCCAaGCGcaCGCCGGuCGGc -5'
5165 5' -63.4 NC_001798.1 + 68430 0.66 0.601492
Target:  5'- aCUGGgGGUUCGUGacuUGGCUcGCCGa -3'
miRNA:   3'- gGGCCgCCAAGCGCac-GCCGGuCGGC- -5'
5165 5' -63.4 NC_001798.1 + 103039 0.66 0.601492
Target:  5'- cCUCGGCGGccUCGCGUcgcacccccucGCGcGUC-GCCGg -3'
miRNA:   3'- -GGGCCGCCa-AGCGCA-----------CGC-CGGuCGGC- -5'
5165 5' -63.4 NC_001798.1 + 5121 0.66 0.600534
Target:  5'- cCCCGuGCGGUgcgUGCGUGUGccugugucuuuucGCCucuccgcGCCGa -3'
miRNA:   3'- -GGGC-CGCCAa--GCGCACGC-------------CGGu------CGGC- -5'
5165 5' -63.4 NC_001798.1 + 90679 0.66 0.591918
Target:  5'- cCCCGGCGacUCGCGcagGGCC-GCCGc -3'
miRNA:   3'- -GGGCCGCcaAGCGCacgCCGGuCGGC- -5'
5165 5' -63.4 NC_001798.1 + 58406 0.66 0.591918
Target:  5'- cCUCGcGCGG--CGCaG-GCGGCCAGCgCGa -3'
miRNA:   3'- -GGGC-CGCCaaGCG-CaCGCCGGUCG-GC- -5'
5165 5' -63.4 NC_001798.1 + 154270 0.66 0.591918
Target:  5'- uCCCGGC---UgGCGUGCGcaGCCcgGGCCGu -3'
miRNA:   3'- -GGGCCGccaAgCGCACGC--CGG--UCGGC- -5'
5165 5' -63.4 NC_001798.1 + 130978 0.66 0.591918
Target:  5'- uUCCGGCGauuagcgUgGCGUGUGGCaucGCCa -3'
miRNA:   3'- -GGGCCGCca-----AgCGCACGCCGgu-CGGc -5'
5165 5' -63.4 NC_001798.1 + 12026 0.66 0.591918
Target:  5'- gCCaCGGCGGggCgGCGggggcaUGCGGUCAGUg- -3'
miRNA:   3'- -GG-GCCGCCaaG-CGC------ACGCCGGUCGgc -5'
5165 5' -63.4 NC_001798.1 + 34600 0.66 0.591918
Target:  5'- uCUCGGUGGgaCGCGggcaaaggGCGGCggCGGCgGg -3'
miRNA:   3'- -GGGCCGCCaaGCGCa-------CGCCG--GUCGgC- -5'
5165 5' -63.4 NC_001798.1 + 112042 0.66 0.590962
Target:  5'- cCCCGGgcUGGUUCGCagcgagGUGCaguauucGGCCAGgCa -3'
miRNA:   3'- -GGGCC--GCCAAGCG------CACG-------CCGGUCgGc -5'
5165 5' -63.4 NC_001798.1 + 113978 0.66 0.590962
Target:  5'- gCCGGCGGUgaggCGuUGUGCGGgaggggcUUGGCCu -3'
miRNA:   3'- gGGCCGCCAa---GC-GCACGCC-------GGUCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.