miRNA display CGI


Results 1 - 20 of 223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5166 3' -60.1 NC_001798.1 + 41461 0.66 0.752367
Target:  5'- cCCGCCgGgggggGCGGuCGGCgGGCCCAGa- -3'
miRNA:   3'- cGGUGGgU-----UGUC-GUCGaCCGGGUCcc -5'
5166 3' -60.1 NC_001798.1 + 9712 0.66 0.752367
Target:  5'- --gGCUCGACgGGCucgGGCUGGCgCUGGGGg -3'
miRNA:   3'- cggUGGGUUG-UCG---UCGACCG-GGUCCC- -5'
5166 3' -60.1 NC_001798.1 + 88770 0.66 0.752367
Target:  5'- gGCCGCCUccggaaagucGGcCAGCAGCUGaucgaacuccGCCCAGc- -3'
miRNA:   3'- -CGGUGGG----------UU-GUCGUCGAC----------CGGGUCcc -5'
5166 3' -60.1 NC_001798.1 + 23703 0.66 0.752367
Target:  5'- gGCCGCUUcACGGCcgGGC-GGCCCcggcGGGu -3'
miRNA:   3'- -CGGUGGGuUGUCG--UCGaCCGGGu---CCC- -5'
5166 3' -60.1 NC_001798.1 + 129660 0.66 0.752367
Target:  5'- uGCCcCCCGACGuGCGcGUggucacccgGGCgCCGGGGc -3'
miRNA:   3'- -CGGuGGGUUGU-CGU-CGa--------CCG-GGUCCC- -5'
5166 3' -60.1 NC_001798.1 + 135353 0.66 0.752367
Target:  5'- cGCCugCCccgcgcucCGGCAGCUG-CUCGGcGGg -3'
miRNA:   3'- -CGGugGGuu------GUCGUCGACcGGGUC-CC- -5'
5166 3' -60.1 NC_001798.1 + 152742 0.66 0.752367
Target:  5'- cCCACCCGGCGGCGcGCgaGGCUCu--- -3'
miRNA:   3'- cGGUGGGUUGUCGU-CGa-CCGGGuccc -5'
5166 3' -60.1 NC_001798.1 + 25731 0.66 0.752367
Target:  5'- cGCC-CCCGACGucuCGGCgcugGGCgCgCAGGGc -3'
miRNA:   3'- -CGGuGGGUUGUc--GUCGa---CCG-G-GUCCC- -5'
5166 3' -60.1 NC_001798.1 + 53912 0.66 0.750487
Target:  5'- cGCCaccuggaccgcggGCCCAGCGGCaccacgGGCucgaugcagugcaUGGCCCugcGGGc -3'
miRNA:   3'- -CGG-------------UGGGUUGUCG------UCG-------------ACCGGGu--CCC- -5'
5166 3' -60.1 NC_001798.1 + 56126 0.66 0.745771
Target:  5'- gGCCGaggauuuUCCGgugggaaaagcgaguGCGGCGGCUuauaacGCCCGGGGg -3'
miRNA:   3'- -CGGU-------GGGU---------------UGUCGUCGAc-----CGGGUCCC- -5'
5166 3' -60.1 NC_001798.1 + 87168 0.66 0.74293
Target:  5'- uGCUGCCCcGCGuGCAGCgcgGGCgaCGGGcGg -3'
miRNA:   3'- -CGGUGGGuUGU-CGUCGa--CCGg-GUCC-C- -5'
5166 3' -60.1 NC_001798.1 + 14378 0.66 0.74293
Target:  5'- uGCgGcCCCAACAGCAGCacaCCCgAGGa -3'
miRNA:   3'- -CGgU-GGGUUGUCGUCGaccGGG-UCCc -5'
5166 3' -60.1 NC_001798.1 + 66759 0.66 0.74293
Target:  5'- uCCGCCUgggguGCGGCGGCgugGGCCgCGGa- -3'
miRNA:   3'- cGGUGGGu----UGUCGUCGa--CCGG-GUCcc -5'
5166 3' -60.1 NC_001798.1 + 72232 0.66 0.74293
Target:  5'- gGCCGUCgAGCAGCuGC-GGCCCGcGGu -3'
miRNA:   3'- -CGGUGGgUUGUCGuCGaCCGGGUcCC- -5'
5166 3' -60.1 NC_001798.1 + 82994 0.66 0.74293
Target:  5'- uGCCGCCgcauacaacaaCAGCuGCAGC-GGaCCCgcAGGGc -3'
miRNA:   3'- -CGGUGG-----------GUUGuCGUCGaCC-GGG--UCCC- -5'
5166 3' -60.1 NC_001798.1 + 97681 0.66 0.74293
Target:  5'- aCCGCCUGACcaAGCGgucGCUGGCCagccucGGGc -3'
miRNA:   3'- cGGUGGGUUG--UCGU---CGACCGGgu----CCC- -5'
5166 3' -60.1 NC_001798.1 + 132940 0.66 0.74293
Target:  5'- uGCCAggacCCCGACAcGUcccuGUcGGCCCAGGc -3'
miRNA:   3'- -CGGU----GGGUUGU-CGu---CGaCCGGGUCCc -5'
5166 3' -60.1 NC_001798.1 + 44977 0.66 0.74293
Target:  5'- cGCCcucggaggcggaGCCgCGGCuGCAGgaGGCCCuGGcGg -3'
miRNA:   3'- -CGG------------UGG-GUUGuCGUCgaCCGGGuCC-C- -5'
5166 3' -60.1 NC_001798.1 + 122525 0.66 0.739129
Target:  5'- cGCCACCCGcgccccguGCuGCAGCccuuugacaucgcGGCCgAGGu -3'
miRNA:   3'- -CGGUGGGU--------UGuCGUCGa------------CCGGgUCCc -5'
5166 3' -60.1 NC_001798.1 + 154044 0.66 0.7334
Target:  5'- aGCgCGCCgGggcGCGGCacGGCUGGagcgCCGGGGc -3'
miRNA:   3'- -CG-GUGGgU---UGUCG--UCGACCg---GGUCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.