miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5166 5' -52.5 NC_001798.1 + 131341 0.66 0.987354
Target:  5'- gCGCCCCGGGCGcgacGUcggcgcCCGGCG-CGg -3'
miRNA:   3'- -GUGGGGCUUGCa---CAaaa---GGUCGCuGC- -5'
5166 5' -52.5 NC_001798.1 + 92965 0.66 0.987354
Target:  5'- uGCCCgGAACGUGgacgCC-GUGGCc -3'
miRNA:   3'- gUGGGgCUUGCACaaaaGGuCGCUGc -5'
5166 5' -52.5 NC_001798.1 + 33929 0.66 0.987354
Target:  5'- aCACCCgCGcGCGUGccuaccUUUCCcuAGCGGCc -3'
miRNA:   3'- -GUGGG-GCuUGCACa-----AAAGG--UCGCUGc -5'
5166 5' -52.5 NC_001798.1 + 65288 0.66 0.985721
Target:  5'- cCGCCCCuuGCGUGUcguagaUgUAGUGGCGg -3'
miRNA:   3'- -GUGGGGcuUGCACAaa----AgGUCGCUGC- -5'
5166 5' -52.5 NC_001798.1 + 73902 0.66 0.985721
Target:  5'- gGCCCCGcGACGUGcugUCC-GCGGa- -3'
miRNA:   3'- gUGGGGC-UUGCACaaaAGGuCGCUgc -5'
5166 5' -52.5 NC_001798.1 + 24831 0.66 0.985721
Target:  5'- --aCCUGcGCGUGg---CCGGCGGCa -3'
miRNA:   3'- gugGGGCuUGCACaaaaGGUCGCUGc -5'
5166 5' -52.5 NC_001798.1 + 111522 0.66 0.985721
Target:  5'- aAUCCCGAcucgGCGUGgggcuccUCCAGCGccCGg -3'
miRNA:   3'- gUGGGGCU----UGCACaaa----AGGUCGCu-GC- -5'
5166 5' -52.5 NC_001798.1 + 129043 0.66 0.98393
Target:  5'- cCGCCCCGGAUcgggcgcugGUGgagUUaaaUAGCGGCGu -3'
miRNA:   3'- -GUGGGGCUUG---------CACaa-AAg--GUCGCUGC- -5'
5166 5' -52.5 NC_001798.1 + 104320 0.66 0.98393
Target:  5'- -cCCCCGAGCGaUGgccuccgCCGG-GACGg -3'
miRNA:   3'- guGGGGCUUGC-ACaaaa---GGUCgCUGC- -5'
5166 5' -52.5 NC_001798.1 + 101831 0.66 0.981975
Target:  5'- aGCUCgCGGcggggggagGCGUGggUcCCGGCGGCGg -3'
miRNA:   3'- gUGGG-GCU---------UGCACaaAaGGUCGCUGC- -5'
5166 5' -52.5 NC_001798.1 + 116255 0.66 0.981975
Target:  5'- cCGCCCCu--CGUGUgggaCuGCGACGg -3'
miRNA:   3'- -GUGGGGcuuGCACAaaagGuCGCUGC- -5'
5166 5' -52.5 NC_001798.1 + 48374 0.66 0.981975
Target:  5'- cCGCCCCGcggGGCGUGccg-CC-GCGACc -3'
miRNA:   3'- -GUGGGGC---UUGCACaaaaGGuCGCUGc -5'
5166 5' -52.5 NC_001798.1 + 128077 0.66 0.979845
Target:  5'- gACCCCGAcccgAUGUGg---UCGGCGuCGg -3'
miRNA:   3'- gUGGGGCU----UGCACaaaaGGUCGCuGC- -5'
5166 5' -52.5 NC_001798.1 + 95710 0.66 0.979845
Target:  5'- uCGCCCgaaagCGGGCGU---UUCaCGGCGACGa -3'
miRNA:   3'- -GUGGG-----GCUUGCAcaaAAG-GUCGCUGC- -5'
5166 5' -52.5 NC_001798.1 + 119461 0.67 0.977534
Target:  5'- gCGCCgCCGu-UGUGcaaUCCGGCGACa -3'
miRNA:   3'- -GUGG-GGCuuGCACaaaAGGUCGCUGc -5'
5166 5' -52.5 NC_001798.1 + 11988 0.67 0.977534
Target:  5'- gGCUgUGGGCGUGgugcgUCgAGCGACa -3'
miRNA:   3'- gUGGgGCUUGCACaaa--AGgUCGCUGc -5'
5166 5' -52.5 NC_001798.1 + 87171 0.67 0.975034
Target:  5'- uGCCCC--GCGUGcagcgCgGGCGACGg -3'
miRNA:   3'- gUGGGGcuUGCACaaaa-GgUCGCUGC- -5'
5166 5' -52.5 NC_001798.1 + 154285 0.67 0.975034
Target:  5'- gCAgCCCGGGcCGUGUUgcgggCCcucuuaaggGGCGGCGg -3'
miRNA:   3'- -GUgGGGCUU-GCACAAaa---GG---------UCGCUGC- -5'
5166 5' -52.5 NC_001798.1 + 91957 0.67 0.971773
Target:  5'- aACCCCGGGCccccccgUCCGGCG-CGa -3'
miRNA:   3'- gUGGGGCUUGcacaaa-AGGUCGCuGC- -5'
5166 5' -52.5 NC_001798.1 + 59982 0.67 0.966323
Target:  5'- aCACCgCCGAcaccGCGuUGggg-CCGGUGGCGg -3'
miRNA:   3'- -GUGG-GGCU----UGC-ACaaaaGGUCGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.