miRNA display CGI


Results 1 - 20 of 177 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5167 3' -62.4 NC_001798.1 + 134984 0.66 0.649732
Target:  5'- cCUGGGgGC-CUGGCCcgcgGUGGgCGCCa- -3'
miRNA:   3'- -GACCUgCGcGACCGG----UACCgGUGGgc -5'
5167 3' -62.4 NC_001798.1 + 45004 0.66 0.649732
Target:  5'- -aGGAgGCcCUGGCgGUGGUCaaugcgcuuuuGCCCGc -3'
miRNA:   3'- gaCCUgCGcGACCGgUACCGG-----------UGGGC- -5'
5167 3' -62.4 NC_001798.1 + 116197 0.66 0.649732
Target:  5'- gCUGGGCGgGCaGGCUcaGGCCgagcugaaucACCUGa -3'
miRNA:   3'- -GACCUGCgCGaCCGGuaCCGG----------UGGGC- -5'
5167 3' -62.4 NC_001798.1 + 34108 0.66 0.649732
Target:  5'- gUGGGgGCGgUGGgCGUacgGGCCcgACCCGc -3'
miRNA:   3'- gACCUgCGCgACCgGUA---CCGG--UGGGC- -5'
5167 3' -62.4 NC_001798.1 + 65272 0.66 0.649732
Target:  5'- uUGGA---GCcGGCgAUGGCCGCCCc -3'
miRNA:   3'- gACCUgcgCGaCCGgUACCGGUGGGc -5'
5167 3' -62.4 NC_001798.1 + 77362 0.66 0.649732
Target:  5'- cCUGGAgGCGCggggGGCCAUcgacGaGCUcacgACCCu -3'
miRNA:   3'- -GACCUgCGCGa---CCGGUA----C-CGG----UGGGc -5'
5167 3' -62.4 NC_001798.1 + 95077 0.66 0.649732
Target:  5'- cCUGGACGUccauguucgcgaGCUgcaaccugcugcGGCCcgugAUGGCCgcgcGCCCGa -3'
miRNA:   3'- -GACCUGCG------------CGA------------CCGG----UACCGG----UGGGC- -5'
5167 3' -62.4 NC_001798.1 + 105425 0.66 0.649732
Target:  5'- -cGG-UGCGCUgGGCCugcagcacuGCCGCCCGc -3'
miRNA:   3'- gaCCuGCGCGA-CCGGuac------CGGUGGGC- -5'
5167 3' -62.4 NC_001798.1 + 133451 0.66 0.649732
Target:  5'- -aGGACGCGgUuaaGCgCGUGGCCgacGCCCu -3'
miRNA:   3'- gaCCUGCGCgAc--CG-GUACCGG---UGGGc -5'
5167 3' -62.4 NC_001798.1 + 147230 0.66 0.647768
Target:  5'- -cGGAgCGCGggGGCCccggggccccgGGCCGCgCCGg -3'
miRNA:   3'- gaCCU-GCGCgaCCGGua---------CCGGUG-GGC- -5'
5167 3' -62.4 NC_001798.1 + 3969 0.66 0.64384
Target:  5'- -aGGcCGCGUcGgcguccagcucgaccGCCggGGCCGCCCGg -3'
miRNA:   3'- gaCCuGCGCGaC---------------CGGuaCCGGUGGGC- -5'
5167 3' -62.4 NC_001798.1 + 147046 0.66 0.63991
Target:  5'- -aGG-UGCGCcccGGCCGgaggGGCC-CCCGc -3'
miRNA:   3'- gaCCuGCGCGa--CCGGUa---CCGGuGGGC- -5'
5167 3' -62.4 NC_001798.1 + 134271 0.66 0.63991
Target:  5'- cCUGGA-GCGCcagacgGGCCGgugGGCCcucuucguCCCGc -3'
miRNA:   3'- -GACCUgCGCGa-----CCGGUa--CCGGu-------GGGC- -5'
5167 3' -62.4 NC_001798.1 + 107196 0.66 0.63991
Target:  5'- -aGGcCGUGUUGGCguuCGUGGCCcucauGCCCc -3'
miRNA:   3'- gaCCuGCGCGACCG---GUACCGG-----UGGGc -5'
5167 3' -62.4 NC_001798.1 + 88393 0.66 0.63991
Target:  5'- uCUGcGGgGCGCUcGGCUAacgcggcGGCCGCuCCGg -3'
miRNA:   3'- -GAC-CUgCGCGA-CCGGUa------CCGGUG-GGC- -5'
5167 3' -62.4 NC_001798.1 + 122114 0.66 0.630083
Target:  5'- -gGGGgGCGCUuuGCCAgccgggggGGCC-CCCGg -3'
miRNA:   3'- gaCCUgCGCGAc-CGGUa-------CCGGuGGGC- -5'
5167 3' -62.4 NC_001798.1 + 151220 0.66 0.630083
Target:  5'- -gGGA-GCGCggGGCCGUccgcgGGUUGCCCGu -3'
miRNA:   3'- gaCCUgCGCGa-CCGGUA-----CCGGUGGGC- -5'
5167 3' -62.4 NC_001798.1 + 35438 0.66 0.630083
Target:  5'- -gGGAgGCGUgGGCCGcUGGCgCcgcgGCCCGu -3'
miRNA:   3'- gaCCUgCGCGaCCGGU-ACCG-G----UGGGC- -5'
5167 3' -62.4 NC_001798.1 + 45295 0.66 0.630083
Target:  5'- -cGGACGUGCUcGUCucccaGGCCAUUCGg -3'
miRNA:   3'- gaCCUGCGCGAcCGGua---CCGGUGGGC- -5'
5167 3' -62.4 NC_001798.1 + 16229 0.66 0.630083
Target:  5'- gUGGGgGgGCgguggGGCCggGGCCcucCCCGc -3'
miRNA:   3'- gACCUgCgCGa----CCGGuaCCGGu--GGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.