miRNA display CGI


Results 1 - 20 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5167 5' -54.3 NC_001798.1 + 149473 0.66 0.966266
Target:  5'- cGCGGGgGcCGcGGCccGCAGCAGGUCCg -3'
miRNA:   3'- cCGCCUgCaGUaCCG--UGUUGUCUGGG- -5'
5167 5' -54.3 NC_001798.1 + 111069 0.66 0.966266
Target:  5'- aGGUacauGACGUgcUcgGGCGaGACGGACCCc -3'
miRNA:   3'- -CCGc---CUGCA--GuaCCGUgUUGUCUGGG- -5'
5167 5' -54.3 NC_001798.1 + 120133 0.66 0.966266
Target:  5'- aGGCGGGCGUCuucUGuuuGUugAGCAGAa-- -3'
miRNA:   3'- -CCGCCUGCAGu--AC---CGugUUGUCUggg -5'
5167 5' -54.3 NC_001798.1 + 134359 0.66 0.966266
Target:  5'- --aGGGCGUCGUGGgGCccGCcGGCCg -3'
miRNA:   3'- ccgCCUGCAGUACCgUGu-UGuCUGGg -5'
5167 5' -54.3 NC_001798.1 + 150122 0.66 0.966266
Target:  5'- aGGCGGAgGaCGaGGC-CGcgGGGCCCg -3'
miRNA:   3'- -CCGCCUgCaGUaCCGuGUugUCUGGG- -5'
5167 5' -54.3 NC_001798.1 + 24048 0.66 0.966266
Target:  5'- uGGCGccCGgggaCGUGGCGCuggacCAGGCCUg -3'
miRNA:   3'- -CCGCcuGCa---GUACCGUGuu---GUCUGGG- -5'
5167 5' -54.3 NC_001798.1 + 53440 0.66 0.966266
Target:  5'- aGGUGGAgcUGUCGggcGGC-CAGCuGAgCCg -3'
miRNA:   3'- -CCGCCU--GCAGUa--CCGuGUUGuCUgGG- -5'
5167 5' -54.3 NC_001798.1 + 75560 0.66 0.966266
Target:  5'- uGGCGGACGU---GGC-CGcccACcGGCCCc -3'
miRNA:   3'- -CCGCCUGCAguaCCGuGU---UGuCUGGG- -5'
5167 5' -54.3 NC_001798.1 + 102020 0.66 0.966266
Target:  5'- uGGCGGgguaGCGggGUGGUugGGCGGGggucUCCg -3'
miRNA:   3'- -CCGCC----UGCagUACCGugUUGUCU----GGG- -5'
5167 5' -54.3 NC_001798.1 + 105619 0.66 0.964319
Target:  5'- gGGCGGGCGaCGacGGCGCucCGGgaagaauuggccggcGCCCa -3'
miRNA:   3'- -CCGCCUGCaGUa-CCGUGuuGUC---------------UGGG- -5'
5167 5' -54.3 NC_001798.1 + 44447 0.66 0.964319
Target:  5'- cGGC-GACGUCGUccgcucgcucgaagcGGCACAcaaacAUGGGCCg -3'
miRNA:   3'- -CCGcCUGCAGUA---------------CCGUGU-----UGUCUGGg -5'
5167 5' -54.3 NC_001798.1 + 40507 0.66 0.962979
Target:  5'- gGGcCGGGgGagG-GGCA-AGCAGACCCg -3'
miRNA:   3'- -CC-GCCUgCagUaCCGUgUUGUCUGGG- -5'
5167 5' -54.3 NC_001798.1 + 44306 0.66 0.962979
Target:  5'- gGGCGGggGCGUUGUGG-ACGAU-GGCCa -3'
miRNA:   3'- -CCGCC--UGCAGUACCgUGUUGuCUGGg -5'
5167 5' -54.3 NC_001798.1 + 124149 0.66 0.962979
Target:  5'- uGGCGGaggccugucccuGCGUCgccccgugcauGUGGUcCAAUAuGGCCCa -3'
miRNA:   3'- -CCGCC------------UGCAG-----------UACCGuGUUGU-CUGGG- -5'
5167 5' -54.3 NC_001798.1 + 137330 0.66 0.962979
Target:  5'- cGGCGGGCGUg--GGguCGGCcauCCCu -3'
miRNA:   3'- -CCGCCUGCAguaCCguGUUGucuGGG- -5'
5167 5' -54.3 NC_001798.1 + 116702 0.66 0.962979
Target:  5'- gGGC--GCGUCGUcGU-CGACGGGCCCg -3'
miRNA:   3'- -CCGccUGCAGUAcCGuGUUGUCUGGG- -5'
5167 5' -54.3 NC_001798.1 + 135142 0.66 0.962979
Target:  5'- cGGCGGcCGUCGggccggucuggacGGCGCGguuuuguuucuccggGCuccAGGCCCa -3'
miRNA:   3'- -CCGCCuGCAGUa------------CCGUGU---------------UG---UCUGGG- -5'
5167 5' -54.3 NC_001798.1 + 23003 0.66 0.962979
Target:  5'- cGCGGACGgCGUcGUcucgccgcgGCAGCuGGCCCu -3'
miRNA:   3'- cCGCCUGCaGUAcCG---------UGUUGuCUGGG- -5'
5167 5' -54.3 NC_001798.1 + 88177 0.66 0.962979
Target:  5'- -aUGGACGggaCcUGcGCGCGGCGGGCCa -3'
miRNA:   3'- ccGCCUGCa--GuAC-CGUGUUGUCUGGg -5'
5167 5' -54.3 NC_001798.1 + 28787 0.66 0.961951
Target:  5'- aGGCGG-CGgCGgcgGcGCGCGgguccuccgccgccGCGGGCCCg -3'
miRNA:   3'- -CCGCCuGCaGUa--C-CGUGU--------------UGUCUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.