miRNA display CGI


Results 1 - 20 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5167 5' -54.3 NC_001798.1 + 109951 1.15 0.001854
Target:  5'- cGGCGGACGUCAUGGCACAACAGACCCg -3'
miRNA:   3'- -CCGCCUGCAGUACCGUGUUGUCUGGG- -5'
5167 5' -54.3 NC_001798.1 + 93366 0.81 0.266478
Target:  5'- aGGUGGACGacgCcgGGC-CGGCGGACCCc -3'
miRNA:   3'- -CCGCCUGCa--GuaCCGuGUUGUCUGGG- -5'
5167 5' -54.3 NC_001798.1 + 84750 0.8 0.33587
Target:  5'- cGGCGGGgcCGUCG-GGCGCuuuuAUAGGCCCg -3'
miRNA:   3'- -CCGCCU--GCAGUaCCGUGu---UGUCUGGG- -5'
5167 5' -54.3 NC_001798.1 + 12264 0.79 0.366296
Target:  5'- cGCGGACGaCcaggccgGUGGCGCAgacccACAGGCCCa -3'
miRNA:   3'- cCGCCUGCaG-------UACCGUGU-----UGUCUGGG- -5'
5167 5' -54.3 NC_001798.1 + 77229 0.78 0.391802
Target:  5'- uGCGGGCG-CAUGGCGCccuGGCGGACgCg -3'
miRNA:   3'- cCGCCUGCaGUACCGUG---UUGUCUGgG- -5'
5167 5' -54.3 NC_001798.1 + 81 0.78 0.426373
Target:  5'- cGGCGGGCGggc-GGCAgGGCAGcCCCg -3'
miRNA:   3'- -CCGCCUGCaguaCCGUgUUGUCuGGG- -5'
5167 5' -54.3 NC_001798.1 + 154419 0.78 0.426373
Target:  5'- cGGCGGGCGggc-GGCAgGGCAGcCCCg -3'
miRNA:   3'- -CCGCCUGCaguaCCGUgUUGUCuGGG- -5'
5167 5' -54.3 NC_001798.1 + 4470 0.77 0.435295
Target:  5'- cGCGGACGUCGUcuccGGU-CcGCGGACCCa -3'
miRNA:   3'- cCGCCUGCAGUA----CCGuGuUGUCUGGG- -5'
5167 5' -54.3 NC_001798.1 + 16076 0.76 0.50057
Target:  5'- cGGCGGGCGUCugugggGGCA-GACAGcgcuCCCg -3'
miRNA:   3'- -CCGCCUGCAGua----CCGUgUUGUCu---GGG- -5'
5167 5' -54.3 NC_001798.1 + 75130 0.76 0.520018
Target:  5'- gGGCaGGGCGgc--GGCgACGACGGGCCCg -3'
miRNA:   3'- -CCG-CCUGCaguaCCG-UGUUGUCUGGG- -5'
5167 5' -54.3 NC_001798.1 + 92405 0.76 0.520018
Target:  5'- cGCGGuCGUCGggucccGCACGACGGGCCUu -3'
miRNA:   3'- cCGCCuGCAGUac----CGUGUUGUCUGGG- -5'
5167 5' -54.3 NC_001798.1 + 153074 0.76 0.529853
Target:  5'- gGGCGGGCGgagCGgcggGGCGgCGcCGGGCCCu -3'
miRNA:   3'- -CCGCCUGCa--GUa---CCGU-GUuGUCUGGG- -5'
5167 5' -54.3 NC_001798.1 + 154153 0.75 0.55974
Target:  5'- uGGCGGGCGgcugGGCuCGGCguAGGCCCg -3'
miRNA:   3'- -CCGCCUGCaguaCCGuGUUG--UCUGGG- -5'
5167 5' -54.3 NC_001798.1 + 15294 0.75 0.568801
Target:  5'- uGGCGGugGUCGcGGCgaccgaaacguugGCGGCcgaGGGCCCc -3'
miRNA:   3'- -CCGCCugCAGUaCCG-------------UGUUG---UCUGGG- -5'
5167 5' -54.3 NC_001798.1 + 94339 0.75 0.579925
Target:  5'- cGGCGGcGCGUCAUGGaccuguucaACAACGGGuuCCUg -3'
miRNA:   3'- -CCGCC-UGCAGUACCg--------UGUUGUCU--GGG- -5'
5167 5' -54.3 NC_001798.1 + 139384 0.75 0.583981
Target:  5'- cGCgGGACGUCcgGGCACcagguccgcccccacAGCAG-CCCg -3'
miRNA:   3'- cCG-CCUGCAGuaCCGUG---------------UUGUCuGGG- -5'
5167 5' -54.3 NC_001798.1 + 74392 0.74 0.590077
Target:  5'- cGGCccGGGgGcCGUGGCGcCGGCGGACCUg -3'
miRNA:   3'- -CCG--CCUgCaGUACCGU-GUUGUCUGGG- -5'
5167 5' -54.3 NC_001798.1 + 3001 0.74 0.610465
Target:  5'- gGGCcccGGGCG-CGggGGCGCGGCGGGCCg -3'
miRNA:   3'- -CCG---CCUGCaGUa-CCGUGUUGUCUGGg -5'
5167 5' -54.3 NC_001798.1 + 133934 0.74 0.610465
Target:  5'- -cCGGGCGUCGUGGCAUGGaAGcCCCc -3'
miRNA:   3'- ccGCCUGCAGUACCGUGUUgUCuGGG- -5'
5167 5' -54.3 NC_001798.1 + 126136 0.74 0.610465
Target:  5'- uGGCGGACGgauggaugagUCcgGGCgACAGC-GACCUg -3'
miRNA:   3'- -CCGCCUGC----------AGuaCCG-UGUUGuCUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.