miRNA display CGI


Results 21 - 40 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5167 5' -54.3 NC_001798.1 + 43338 0.66 0.960903
Target:  5'- gGGCGGcagugccgccccccGCGUCGuccccggggguuguUGGUGCGaacGCGGGCCa -3'
miRNA:   3'- -CCGCC--------------UGCAGU--------------ACCGUGU---UGUCUGGg -5'
5167 5' -54.3 NC_001798.1 + 149266 0.66 0.959475
Target:  5'- cGCGGGCGcgcccugcUCccgagaccacggGUGGCGCGACcggAGGCCg -3'
miRNA:   3'- cCGCCUGC--------AG------------UACCGUGUUG---UCUGGg -5'
5167 5' -54.3 NC_001798.1 + 65816 0.66 0.959475
Target:  5'- uGCGGGCGaggAUGGCGCucACGuugccggugauGGCCCg -3'
miRNA:   3'- cCGCCUGCag-UACCGUGu-UGU-----------CUGGG- -5'
5167 5' -54.3 NC_001798.1 + 23880 0.66 0.959475
Target:  5'- uGGgGGGCGccCGaGGCGgAggaggcGCGGGCCCg -3'
miRNA:   3'- -CCgCCUGCa-GUaCCGUgU------UGUCUGGG- -5'
5167 5' -54.3 NC_001798.1 + 97845 0.66 0.959475
Target:  5'- cGGCGGGCG-CG-GGCACGGuCAucGACaaCCg -3'
miRNA:   3'- -CCGCCUGCaGUaCCGUGUU-GU--CUG--GG- -5'
5167 5' -54.3 NC_001798.1 + 108862 0.66 0.959475
Target:  5'- gGGCuGGCGUUcgGGUGCGACGccgcGCUCg -3'
miRNA:   3'- -CCGcCUGCAGuaCCGUGUUGUc---UGGG- -5'
5167 5' -54.3 NC_001798.1 + 130989 0.66 0.959475
Target:  5'- aGCGuGGCGU-GUGGCAUcgccauACGGGCCg -3'
miRNA:   3'- cCGC-CUGCAgUACCGUGu-----UGUCUGGg -5'
5167 5' -54.3 NC_001798.1 + 134239 0.66 0.959475
Target:  5'- uGGCGGGCGcugUAUGcGUGCGuucugGCGG-CCCu -3'
miRNA:   3'- -CCGCCUGCa--GUAC-CGUGU-----UGUCuGGG- -5'
5167 5' -54.3 NC_001798.1 + 134480 0.66 0.959475
Target:  5'- cGUGGGCGcgCcUGGCcgccauucGCGACAGcCCCc -3'
miRNA:   3'- cCGCCUGCa-GuACCG--------UGUUGUCuGGG- -5'
5167 5' -54.3 NC_001798.1 + 35305 0.66 0.959475
Target:  5'- cGGCuuaauGGAUcUCcgGGCACGGC--GCCCg -3'
miRNA:   3'- -CCG-----CCUGcAGuaCCGUGUUGucUGGG- -5'
5167 5' -54.3 NC_001798.1 + 63276 0.66 0.959475
Target:  5'- gGGCGGAauaCAggGGCuGCAuauggauCAGGCCCa -3'
miRNA:   3'- -CCGCCUgcaGUa-CCG-UGUu------GUCUGGG- -5'
5167 5' -54.3 NC_001798.1 + 104786 0.66 0.959475
Target:  5'- cGCGGAgG-CG-GGC-CAGCAGGuCCCc -3'
miRNA:   3'- cCGCCUgCaGUaCCGuGUUGUCU-GGG- -5'
5167 5' -54.3 NC_001798.1 + 127027 0.66 0.959475
Target:  5'- cGGcCGGcCGUCcUGGC-CGACuuuagccugguGACCCu -3'
miRNA:   3'- -CC-GCCuGCAGuACCGuGUUGu----------CUGGG- -5'
5167 5' -54.3 NC_001798.1 + 42499 0.66 0.95575
Target:  5'- gGGCGGGgacCGgua-GGCACAcgcGCAG-CCCg -3'
miRNA:   3'- -CCGCCU---GCaguaCCGUGU---UGUCuGGG- -5'
5167 5' -54.3 NC_001798.1 + 149657 0.66 0.95575
Target:  5'- aGGcCGGGCG-CcgGGUc--GCGGGCCCc -3'
miRNA:   3'- -CC-GCCUGCaGuaCCGuguUGUCUGGG- -5'
5167 5' -54.3 NC_001798.1 + 59057 0.66 0.95575
Target:  5'- uGGCGucCG-CAUacgGGCcgcgcgacagaACGACAGACCCc -3'
miRNA:   3'- -CCGCcuGCaGUA---CCG-----------UGUUGUCUGGG- -5'
5167 5' -54.3 NC_001798.1 + 68316 0.66 0.95575
Target:  5'- aGCGGGggcUGUCGucUGGCAUGAC--ACCCa -3'
miRNA:   3'- cCGCCU---GCAGU--ACCGUGUUGucUGGG- -5'
5167 5' -54.3 NC_001798.1 + 135810 0.66 0.95575
Target:  5'- cGGCccgGGGCGUCAUGG-AgGACGccuguGACCg -3'
miRNA:   3'- -CCG---CCUGCAGUACCgUgUUGU-----CUGGg -5'
5167 5' -54.3 NC_001798.1 + 96713 0.66 0.95575
Target:  5'- cGGCGGugGggucgggccucaUCGUGcccccggaGCugAGC-GACCCg -3'
miRNA:   3'- -CCGCCugC------------AGUAC--------CGugUUGuCUGGG- -5'
5167 5' -54.3 NC_001798.1 + 128592 0.66 0.95575
Target:  5'- cGCGGACG-CG-GGCGuCAACGacGACgCCg -3'
miRNA:   3'- cCGCCUGCaGUaCCGU-GUUGU--CUG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.