miRNA display CGI


Results 1 - 20 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5167 5' -54.3 NC_001798.1 + 81 0.78 0.426373
Target:  5'- cGGCGGGCGggc-GGCAgGGCAGcCCCg -3'
miRNA:   3'- -CCGCCUGCaguaCCGUgUUGUCuGGG- -5'
5167 5' -54.3 NC_001798.1 + 1644 0.71 0.779707
Target:  5'- cGGCGGcGCGUCggGGUACAggcgcgcguGCGcGGCCUc -3'
miRNA:   3'- -CCGCC-UGCAGuaCCGUGU---------UGU-CUGGG- -5'
5167 5' -54.3 NC_001798.1 + 1879 0.69 0.871816
Target:  5'- cGGCGGuCG-CAggcgccGGC-CAGCAGcCCCa -3'
miRNA:   3'- -CCGCCuGCaGUa-----CCGuGUUGUCuGGG- -5'
5167 5' -54.3 NC_001798.1 + 1975 0.67 0.923178
Target:  5'- aGCGccgaGACGUCGggGGCGCGGucCAGuuGCCCg -3'
miRNA:   3'- cCGC----CUGCAGUa-CCGUGUU--GUC--UGGG- -5'
5167 5' -54.3 NC_001798.1 + 2014 0.67 0.947618
Target:  5'- aGGCGGcCGUgGcgGGC-CcGCAGAgCCg -3'
miRNA:   3'- -CCGCCuGCAgUa-CCGuGuUGUCUgGG- -5'
5167 5' -54.3 NC_001798.1 + 2203 0.74 0.630918
Target:  5'- aGGCcGcCG-CGcGGCGCAGCGGGCCCg -3'
miRNA:   3'- -CCGcCuGCaGUaCCGUGUUGUCUGGG- -5'
5167 5' -54.3 NC_001798.1 + 2266 0.68 0.905657
Target:  5'- cGGgGGGCGgggcGGCGCAGCGcgcGGCCa -3'
miRNA:   3'- -CCgCCUGCaguaCCGUGUUGU---CUGGg -5'
5167 5' -54.3 NC_001798.1 + 2482 0.71 0.788909
Target:  5'- cGGCGGGCcggcggGUCAgcgccgcggGGCGCGGCGG-CCg -3'
miRNA:   3'- -CCGCCUG------CAGUa--------CCGUGUUGUCuGGg -5'
5167 5' -54.3 NC_001798.1 + 2522 0.71 0.770373
Target:  5'- cGGCGGcgGCGUCGgcggGGCGgGggGCGcGGCCCc -3'
miRNA:   3'- -CCGCC--UGCAGUa---CCGUgU--UGU-CUGGG- -5'
5167 5' -54.3 NC_001798.1 + 2606 0.68 0.917575
Target:  5'- cGGgGGGCG-CggGGCGCcgcccGGCGGcGCCCu -3'
miRNA:   3'- -CCgCCUGCaGuaCCGUG-----UUGUC-UGGG- -5'
5167 5' -54.3 NC_001798.1 + 2779 0.71 0.792551
Target:  5'- cGGCGGAgcUCAgcaGGCGCGGgcuccgcggcagcgcCGGGCCCa -3'
miRNA:   3'- -CCGCCUgcAGUa--CCGUGUU---------------GUCUGGG- -5'
5167 5' -54.3 NC_001798.1 + 2961 0.72 0.702098
Target:  5'- aGGCGGggcGCGUCGgcgugcGGCGgGGCGGccgGCCCg -3'
miRNA:   3'- -CCGCC---UGCAGUa-----CCGUgUUGUC---UGGG- -5'
5167 5' -54.3 NC_001798.1 + 3001 0.74 0.610465
Target:  5'- gGGCcccGGGCG-CGggGGCGCGGCGGGCCg -3'
miRNA:   3'- -CCG---CCUGCaGUa-CCGUGUUGUCUGGg -5'
5167 5' -54.3 NC_001798.1 + 3213 0.69 0.886029
Target:  5'- aGGCGGGCGc---GGCGCu-CAGGCgCCc -3'
miRNA:   3'- -CCGCCUGCaguaCCGUGuuGUCUG-GG- -5'
5167 5' -54.3 NC_001798.1 + 3444 0.68 0.911734
Target:  5'- aGGCGcGGCG-CA-GGCugguCAGCAGgaaGCCCu -3'
miRNA:   3'- -CCGC-CUGCaGUaCCGu---GUUGUC---UGGG- -5'
5167 5' -54.3 NC_001798.1 + 3494 0.7 0.840862
Target:  5'- cGGCGG-C-UCAUGGcCACGGCGGccGCCa -3'
miRNA:   3'- -CCGCCuGcAGUACC-GUGUUGUC--UGGg -5'
5167 5' -54.3 NC_001798.1 + 4018 0.67 0.943204
Target:  5'- cGGCccguGGCGUCGcGGC-CGgccaccgccgcGCGGGCCCg -3'
miRNA:   3'- -CCGc---CUGCAGUaCCGuGU-----------UGUCUGGG- -5'
5167 5' -54.3 NC_001798.1 + 4086 0.73 0.692035
Target:  5'- cGCGGGgGUCcgGGcCGgGGCGGGCUCg -3'
miRNA:   3'- cCGCCUgCAGuaCC-GUgUUGUCUGGG- -5'
5167 5' -54.3 NC_001798.1 + 4119 0.71 0.788909
Target:  5'- gGGCGGGC-UCGgccggGGCGCcGCccccgGGGCCCu -3'
miRNA:   3'- -CCGCCUGcAGUa----CCGUGuUG-----UCUGGG- -5'
5167 5' -54.3 NC_001798.1 + 4390 0.7 0.824221
Target:  5'- uGGUGGugGUgGUGGUGuCGGCGGGgCgCCg -3'
miRNA:   3'- -CCGCCugCAgUACCGU-GUUGUCU-G-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.