miRNA display CGI


Results 21 - 40 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5167 5' -54.3 NC_001798.1 + 4470 0.77 0.435295
Target:  5'- cGCGGACGUCGUcuccGGU-CcGCGGACCCa -3'
miRNA:   3'- cCGCCUGCAGUA----CCGuGuUGUCUGGG- -5'
5167 5' -54.3 NC_001798.1 + 4878 0.68 0.917575
Target:  5'- cGGCGGucCGUC--GGCugGAUccggAGAUCCg -3'
miRNA:   3'- -CCGCCu-GCAGuaCCGugUUG----UCUGGG- -5'
5167 5' -54.3 NC_001798.1 + 6062 0.67 0.933667
Target:  5'- cGGCGG-CGagCggGGCAcCGACGcACCCg -3'
miRNA:   3'- -CCGCCuGCa-GuaCCGU-GUUGUcUGGG- -5'
5167 5' -54.3 NC_001798.1 + 7145 0.66 0.951799
Target:  5'- aGCGGACacgCuugaagGGCACucgcuuccgaccGACGGGCCCc -3'
miRNA:   3'- cCGCCUGca-Gua----CCGUG------------UUGUCUGGG- -5'
5167 5' -54.3 NC_001798.1 + 9700 0.74 0.64115
Target:  5'- uGCGGGCGggugGGCuCGACGGGCUCg -3'
miRNA:   3'- cCGCCUGCaguaCCGuGUUGUCUGGG- -5'
5167 5' -54.3 NC_001798.1 + 10384 0.67 0.943204
Target:  5'- cGuCGGGgGUCGgggucGGCACAgggGCGGGCuCCa -3'
miRNA:   3'- cC-GCCUgCAGUa----CCGUGU---UGUCUG-GG- -5'
5167 5' -54.3 NC_001798.1 + 10816 0.67 0.930621
Target:  5'- --aGGACGUucugggugcugccgcCA-GGCACGAUAcGACCCa -3'
miRNA:   3'- ccgCCUGCA---------------GUaCCGUGUUGU-CUGGG- -5'
5167 5' -54.3 NC_001798.1 + 11862 0.68 0.917575
Target:  5'- cGGCuGGCGuUCGUcGCGCuGCcGACCCa -3'
miRNA:   3'- -CCGcCUGC-AGUAcCGUGuUGuCUGGG- -5'
5167 5' -54.3 NC_001798.1 + 12264 0.79 0.366296
Target:  5'- cGCGGACGaCcaggccgGUGGCGCAgacccACAGGCCCa -3'
miRNA:   3'- cCGCCUGCaG-------UACCGUGU-----UGUCUGGG- -5'
5167 5' -54.3 NC_001798.1 + 12369 0.66 0.951799
Target:  5'- cGCGGugGcuaaUCGUcGGgACAGCGGugCg -3'
miRNA:   3'- cCGCCugC----AGUA-CCgUGUUGUCugGg -5'
5167 5' -54.3 NC_001798.1 + 12717 0.7 0.840862
Target:  5'- cGGCGGGgG-CGUGGUGCGGCGcGACguCCu -3'
miRNA:   3'- -CCGCCUgCaGUACCGUGUUGU-CUG--GG- -5'
5167 5' -54.3 NC_001798.1 + 14940 0.7 0.806881
Target:  5'- aGGgGGAUGUguUGGggUGugGGGCCCg -3'
miRNA:   3'- -CCgCCUGCAguACCguGUugUCUGGG- -5'
5167 5' -54.3 NC_001798.1 + 15037 0.72 0.722037
Target:  5'- uGGCGGGag-CGUGGgGCGgAUGGGCCCg -3'
miRNA:   3'- -CCGCCUgcaGUACCgUGU-UGUCUGGG- -5'
5167 5' -54.3 NC_001798.1 + 15294 0.75 0.568801
Target:  5'- uGGCGGugGUCGcGGCgaccgaaacguugGCGGCcgaGGGCCCc -3'
miRNA:   3'- -CCGCCugCAGUaCCG-------------UGUUG---UCUGGG- -5'
5167 5' -54.3 NC_001798.1 + 15382 0.69 0.856745
Target:  5'- gGGCGcGGCGga--GGCGCccacCGGACCCg -3'
miRNA:   3'- -CCGC-CUGCaguaCCGUGuu--GUCUGGG- -5'
5167 5' -54.3 NC_001798.1 + 15948 0.72 0.712102
Target:  5'- cGgGGGCccaAUGGgGCGGCAGACCCc -3'
miRNA:   3'- cCgCCUGcagUACCgUGUUGUCUGGG- -5'
5167 5' -54.3 NC_001798.1 + 16076 0.76 0.50057
Target:  5'- cGGCGGGCGUCugugggGGCA-GACAGcgcuCCCg -3'
miRNA:   3'- -CCGCCUGCAGua----CCGUgUUGUCu---GGG- -5'
5167 5' -54.3 NC_001798.1 + 16235 0.67 0.933667
Target:  5'- gGGCGGugGggCcgGggcccuccccGCccaccucuacccACAACAGACCCa -3'
miRNA:   3'- -CCGCCugCa-GuaC----------CG------------UGUUGUCUGGG- -5'
5167 5' -54.3 NC_001798.1 + 16485 0.67 0.933667
Target:  5'- gGGCuGACGgCA-GGCGCGGguGAgCCg -3'
miRNA:   3'- -CCGcCUGCaGUaCCGUGUUguCUgGG- -5'
5167 5' -54.3 NC_001798.1 + 17969 0.71 0.770373
Target:  5'- aGGUccGGACGUCGgggGGgGCuGCGcGGCCCg -3'
miRNA:   3'- -CCG--CCUGCAGUa--CCgUGuUGU-CUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.