miRNA display CGI


Results 1 - 20 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5167 5' -54.3 NC_001798.1 + 154419 0.78 0.426373
Target:  5'- cGGCGGGCGggc-GGCAgGGCAGcCCCg -3'
miRNA:   3'- -CCGCCUGCaguaCCGUgUUGUCuGGG- -5'
5167 5' -54.3 NC_001798.1 + 154153 0.75 0.55974
Target:  5'- uGGCGGGCGgcugGGCuCGGCguAGGCCCg -3'
miRNA:   3'- -CCGCCUGCaguaCCGuGUUG--UCUGGG- -5'
5167 5' -54.3 NC_001798.1 + 154087 0.69 0.871816
Target:  5'- cGGCuGGAgCGcCggGGCGCGGCcggcgccggGGACCCc -3'
miRNA:   3'- -CCG-CCU-GCaGuaCCGUGUUG---------UCUGGG- -5'
5167 5' -54.3 NC_001798.1 + 153806 0.69 0.871816
Target:  5'- cGGCGGGgGgCA-GGCGgCGGCAGGCgCg -3'
miRNA:   3'- -CCGCCUgCaGUaCCGU-GUUGUCUGgG- -5'
5167 5' -54.3 NC_001798.1 + 153764 0.67 0.933667
Target:  5'- gGGCGGAaGgg--GGCGCuGCGG-CCCg -3'
miRNA:   3'- -CCGCCUgCaguaCCGUGuUGUCuGGG- -5'
5167 5' -54.3 NC_001798.1 + 153074 0.76 0.529853
Target:  5'- gGGCGGGCGgagCGgcggGGCGgCGcCGGGCCCu -3'
miRNA:   3'- -CCGCCUGCa--GUa---CCGU-GUuGUCUGGG- -5'
5167 5' -54.3 NC_001798.1 + 153009 0.7 0.806881
Target:  5'- gGGCGGuCGcCggGGCGgAGucCGGGCCCg -3'
miRNA:   3'- -CCGCCuGCaGuaCCGUgUU--GUCUGGG- -5'
5167 5' -54.3 NC_001798.1 + 151622 0.69 0.864385
Target:  5'- gGGcCGGGgG-CGUGGcCGCGuccauCAGGCCCg -3'
miRNA:   3'- -CC-GCCUgCaGUACC-GUGUu----GUCUGGG- -5'
5167 5' -54.3 NC_001798.1 + 151583 0.69 0.864385
Target:  5'- cGGCGGGCGUgGggcugcccUGGCGCucgGCcggGGGCCg -3'
miRNA:   3'- -CCGCCUGCAgU--------ACCGUGu--UG---UCUGGg -5'
5167 5' -54.3 NC_001798.1 + 151178 0.67 0.938554
Target:  5'- gGGUGGGCGaCAgGGCGC---GGACCg -3'
miRNA:   3'- -CCGCCUGCaGUaCCGUGuugUCUGGg -5'
5167 5' -54.3 NC_001798.1 + 150472 0.66 0.950569
Target:  5'- cGgGGGCG-CGcGGCGCGccccgacgacugugGCAGACCUc -3'
miRNA:   3'- cCgCCUGCaGUaCCGUGU--------------UGUCUGGG- -5'
5167 5' -54.3 NC_001798.1 + 150422 0.68 0.905657
Target:  5'- gGGCGG-CGgc--GGCGCGggGCGGACuCCg -3'
miRNA:   3'- -CCGCCuGCaguaCCGUGU--UGUCUG-GG- -5'
5167 5' -54.3 NC_001798.1 + 150353 0.73 0.681923
Target:  5'- cGCGGugcGCGUCcaccGGCACGgcgggcggcGCGGGCCCg -3'
miRNA:   3'- cCGCC---UGCAGua--CCGUGU---------UGUCUGGG- -5'
5167 5' -54.3 NC_001798.1 + 150122 0.66 0.966266
Target:  5'- aGGCGGAgGaCGaGGC-CGcgGGGCCCg -3'
miRNA:   3'- -CCGCCUgCaGUaCCGuGUugUCUGGG- -5'
5167 5' -54.3 NC_001798.1 + 149994 0.71 0.79797
Target:  5'- cGCGGACGcCggGGCG-AGCGG-CCCg -3'
miRNA:   3'- cCGCCUGCaGuaCCGUgUUGUCuGGG- -5'
5167 5' -54.3 NC_001798.1 + 149657 0.66 0.95575
Target:  5'- aGGcCGGGCG-CcgGGUc--GCGGGCCCc -3'
miRNA:   3'- -CC-GCCUGCaGuaCCGuguUGUCUGGG- -5'
5167 5' -54.3 NC_001798.1 + 149473 0.66 0.966266
Target:  5'- cGCGGGgGcCGcGGCccGCAGCAGGUCCg -3'
miRNA:   3'- cCGCCUgCaGUaCCG--UGUUGUCUGGG- -5'
5167 5' -54.3 NC_001798.1 + 149400 0.69 0.879032
Target:  5'- cGGgGGGCGUCG-GGUAguCGGgGGGCCUc -3'
miRNA:   3'- -CCgCCUGCAGUaCCGU--GUUgUCUGGG- -5'
5167 5' -54.3 NC_001798.1 + 149266 0.66 0.959475
Target:  5'- cGCGGGCGcgcccugcUCccgagaccacggGUGGCGCGACcggAGGCCg -3'
miRNA:   3'- cCGCCUGC--------AG------------UACCGUGUUG---UCUGGg -5'
5167 5' -54.3 NC_001798.1 + 148386 0.69 0.871816
Target:  5'- gGGCGGGCGUgGcgGGCAgGuguGCGGGCg- -3'
miRNA:   3'- -CCGCCUGCAgUa-CCGUgU---UGUCUGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.