miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5168 3' -48.3 NC_001798.1 + 135140 0.66 0.999797
Target:  5'- cCCGGCgGCCGuc-GGGCCgg-UCUGGa -3'
miRNA:   3'- -GGCUGgUGGUcuuUUUGGagaAGACC- -5'
5168 3' -48.3 NC_001798.1 + 134191 0.66 0.999797
Target:  5'- aCGGCC-CCGGcc--GCCUCcccgCUGGa -3'
miRNA:   3'- gGCUGGuGGUCuuuuUGGAGaa--GACC- -5'
5168 3' -48.3 NC_001798.1 + 81249 0.66 0.999797
Target:  5'- cCCGACCGCCGcccgcGAcccgcGGGACCUUgcggGGg -3'
miRNA:   3'- -GGCUGGUGGU-----CU-----UUUUGGAGaagaCC- -5'
5168 3' -48.3 NC_001798.1 + 49821 0.66 0.999588
Target:  5'- gCGAgCACCu---GAACCUCccgCUGGu -3'
miRNA:   3'- gGCUgGUGGucuuUUUGGAGaa-GACC- -5'
5168 3' -48.3 NC_001798.1 + 65716 0.66 0.999588
Target:  5'- gCCG-CCACCAGGGAgucgagGACCU--UCaGGg -3'
miRNA:   3'- -GGCuGGUGGUCUUU------UUGGAgaAGaCC- -5'
5168 3' -48.3 NC_001798.1 + 107227 0.66 0.999588
Target:  5'- cCCGACCGcgcCCGGcacGAACCUggUcCUGGg -3'
miRNA:   3'- -GGCUGGU---GGUCuu-UUUGGAgaA-GACC- -5'
5168 3' -48.3 NC_001798.1 + 135684 0.66 0.999486
Target:  5'- aCCGAcuuCCugCAGGGAuuuCCUCUcCgcgGGg -3'
miRNA:   3'- -GGCU---GGugGUCUUUuu-GGAGAaGa--CC- -5'
5168 3' -48.3 NC_001798.1 + 81059 0.66 0.999486
Target:  5'- -aGGCCACC-GAGGAGCUUCcguUUgUGGc -3'
miRNA:   3'- ggCUGGUGGuCUUUUUGGAG---AAgACC- -5'
5168 3' -48.3 NC_001798.1 + 78858 0.66 0.999486
Target:  5'- gCCGGCCGCCuGggG-GCgCUCUUUg-- -3'
miRNA:   3'- -GGCUGGUGGuCuuUuUG-GAGAAGacc -5'
5168 3' -48.3 NC_001798.1 + 97092 0.66 0.999486
Target:  5'- cCCGgccuguacGCCAUCAGc-GAGCUgcgCUUCUGGc -3'
miRNA:   3'- -GGC--------UGGUGGUCuuUUUGGa--GAAGACC- -5'
5168 3' -48.3 NC_001798.1 + 32878 0.67 0.999362
Target:  5'- aCCgGACCACCGgccGAGGcGCCUCgg--GGg -3'
miRNA:   3'- -GG-CUGGUGGU---CUUUuUGGAGaagaCC- -5'
5168 3' -48.3 NC_001798.1 + 58109 0.67 0.999362
Target:  5'- gCGGCCGcCCAGG---GCC-CggcgUCUGGg -3'
miRNA:   3'- gGCUGGU-GGUCUuuuUGGaGa---AGACC- -5'
5168 3' -48.3 NC_001798.1 + 123791 0.67 0.999036
Target:  5'- uUCGGCCACCuGGAAGcuGCCUCccccCcGGa -3'
miRNA:   3'- -GGCUGGUGGuCUUUU--UGGAGaa--GaCC- -5'
5168 3' -48.3 NC_001798.1 + 7717 0.67 0.999036
Target:  5'- gCgGACCACCGG----GCCUUUUUUcGGa -3'
miRNA:   3'- -GgCUGGUGGUCuuuuUGGAGAAGA-CC- -5'
5168 3' -48.3 NC_001798.1 + 109048 0.67 0.999036
Target:  5'- gCCGGCC-CCAGGuaucGCgUCUUugucCUGGg -3'
miRNA:   3'- -GGCUGGuGGUCUuuu-UGgAGAA----GACC- -5'
5168 3' -48.3 NC_001798.1 + 139852 0.67 0.999036
Target:  5'- cCUGGCCAgCAGccccGCCUCg-CUGGa -3'
miRNA:   3'- -GGCUGGUgGUCuuuuUGGAGaaGACC- -5'
5168 3' -48.3 NC_001798.1 + 77014 0.67 0.999036
Target:  5'- cCCGACC-CCGGAu--ACCgcgaCggcUCUGGc -3'
miRNA:   3'- -GGCUGGuGGUCUuuuUGGa---Ga--AGACC- -5'
5168 3' -48.3 NC_001798.1 + 130423 0.67 0.999036
Target:  5'- aCGAgCGCCAGGGcGACgcggaCUCccgUCUGGg -3'
miRNA:   3'- gGCUgGUGGUCUUuUUG-----GAGa--AGACC- -5'
5168 3' -48.3 NC_001798.1 + 18966 0.67 0.998825
Target:  5'- aCGACCcCCuGGAAAGCaucgagaUUCUGGa -3'
miRNA:   3'- gGCUGGuGGuCUUUUUGgag----AAGACC- -5'
5168 3' -48.3 NC_001798.1 + 67558 0.67 0.998577
Target:  5'- gUCG-CCGCCAGggGgggcGACCUCgggCUcccGGg -3'
miRNA:   3'- -GGCuGGUGGUCuuU----UUGGAGaa-GA---CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.