miRNA display CGI


Results 1 - 20 of 44 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5168 5' -57.8 NC_001798.1 + 19813 0.66 0.839748
Target:  5'- aCCCGUccucGCGUucuggGGCUUCCgUUGCGCg-- -3'
miRNA:   3'- gGGGUA----CGCG-----UCGAAGG-GACGCGaag -5'
5168 5' -57.8 NC_001798.1 + 86165 0.66 0.839748
Target:  5'- gCgCAUGCGCGacGCggCCCcGCGUUUUg -3'
miRNA:   3'- gGgGUACGCGU--CGaaGGGaCGCGAAG- -5'
5168 5' -57.8 NC_001798.1 + 4969 0.66 0.831523
Target:  5'- aCCUcgGCcCcGCggCCCUGCGCgUCg -3'
miRNA:   3'- gGGGuaCGcGuCGaaGGGACGCGaAG- -5'
5168 5' -57.8 NC_001798.1 + 107460 0.66 0.81454
Target:  5'- aCCCCGaggacgGCGCGGggUCUCUGCcccGCaUCg -3'
miRNA:   3'- -GGGGUa-----CGCGUCgaAGGGACG---CGaAG- -5'
5168 5' -57.8 NC_001798.1 + 122477 0.66 0.81454
Target:  5'- gCCCAgacgGCGCuGCUgcgucgcuuUCCC-GCGCUc- -3'
miRNA:   3'- gGGGUa---CGCGuCGA---------AGGGaCGCGAag -5'
5168 5' -57.8 NC_001798.1 + 124140 0.66 0.81454
Target:  5'- cCCCCGccgugGCGgaGGCcugUCCCUGCGUc-- -3'
miRNA:   3'- -GGGGUa----CGCg-UCGa--AGGGACGCGaag -5'
5168 5' -57.8 NC_001798.1 + 121279 0.66 0.805798
Target:  5'- cCCUCGUGCGCGGCcgCCCcgacggugGgGCg-- -3'
miRNA:   3'- -GGGGUACGCGUCGaaGGGa-------CgCGaag -5'
5168 5' -57.8 NC_001798.1 + 117069 0.66 0.7969
Target:  5'- gCCCGUgGUGCAGCacgCCCgcgagaGCGCggCg -3'
miRNA:   3'- gGGGUA-CGCGUCGaa-GGGa-----CGCGaaG- -5'
5168 5' -57.8 NC_001798.1 + 137227 0.66 0.7969
Target:  5'- -gCCAUGCGCAGCagCgCCUGguUGCUg- -3'
miRNA:   3'- ggGGUACGCGUCGaaG-GGAC--GCGAag -5'
5168 5' -57.8 NC_001798.1 + 120345 0.66 0.7969
Target:  5'- gCCCCGggGUGCAGCgccagCaCCUGgGCg-- -3'
miRNA:   3'- -GGGGUa-CGCGUCGaa---G-GGACgCGaag -5'
5168 5' -57.8 NC_001798.1 + 51435 0.67 0.787854
Target:  5'- gCCCCGggGCGCGGCcUUCC-GCGacggUCg -3'
miRNA:   3'- -GGGGUa-CGCGUCGaAGGGaCGCga--AG- -5'
5168 5' -57.8 NC_001798.1 + 80790 0.67 0.787854
Target:  5'- gCCCCGgcggGC-CGGaCgccgCCCUGCGCgacgUCg -3'
miRNA:   3'- -GGGGUa---CGcGUC-Gaa--GGGACGCGa---AG- -5'
5168 5' -57.8 NC_001798.1 + 111490 0.67 0.787854
Target:  5'- aCCCAUGCaCGGCgcggaccUCCUcGCGCgUCa -3'
miRNA:   3'- gGGGUACGcGUCGa------AGGGaCGCGaAG- -5'
5168 5' -57.8 NC_001798.1 + 30581 0.67 0.777744
Target:  5'- gCCCC-UGCGCuGCcagaguuUUCCCUGC-CUg- -3'
miRNA:   3'- -GGGGuACGCGuCG-------AAGGGACGcGAag -5'
5168 5' -57.8 NC_001798.1 + 96764 0.67 0.759917
Target:  5'- aCCCGUGCGCGGUcugUUUCgaggagCUGUGCgUCa -3'
miRNA:   3'- gGGGUACGCGUCG---AAGG------GACGCGaAG- -5'
5168 5' -57.8 NC_001798.1 + 9646 0.67 0.759917
Target:  5'- gCCCCGagGCGCAGCgggCCgC-GCGCg-- -3'
miRNA:   3'- -GGGGUa-CGCGUCGaa-GG-GaCGCGaag -5'
5168 5' -57.8 NC_001798.1 + 138802 0.67 0.750369
Target:  5'- cCCCCAgGCGCuGCgucgccuccCCCUcGCGCgUCu -3'
miRNA:   3'- -GGGGUaCGCGuCGaa-------GGGA-CGCGaAG- -5'
5168 5' -57.8 NC_001798.1 + 151561 0.67 0.750369
Target:  5'- cCCCCA----CAGgaUCCCUGCGCgUCg -3'
miRNA:   3'- -GGGGUacgcGUCgaAGGGACGCGaAG- -5'
5168 5' -57.8 NC_001798.1 + 148898 0.67 0.750369
Target:  5'- cCCCCAUcCcCGGCccCCCUGCGCg-- -3'
miRNA:   3'- -GGGGUAcGcGUCGaaGGGACGCGaag -5'
5168 5' -57.8 NC_001798.1 + 53102 0.67 0.750369
Target:  5'- aCgCCGggcGCGCGGCgcgagcUCCCUGCgGCUg- -3'
miRNA:   3'- -GgGGUa--CGCGUCGa-----AGGGACG-CGAag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.