miRNA display CGI


Results 61 - 80 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5169 3' -64.8 NC_001798.1 + 79938 0.67 0.476872
Target:  5'- gCUgGGCccagcuggGCUGGGCGUCCggagCGGCGGc -3'
miRNA:   3'- -GAgCCG--------CGACCUGCGGGag--GCCGCCc -5'
5169 3' -64.8 NC_001798.1 + 48105 0.67 0.476872
Target:  5'- -aCGGCGCcgUGGAC-CCC-CCGGguggcCGGGu -3'
miRNA:   3'- gaGCCGCG--ACCUGcGGGaGGCC-----GCCC- -5'
5169 3' -64.8 NC_001798.1 + 4563 0.67 0.476872
Target:  5'- aUCGGCGCgcauggaGGGgGUCCg-CGGCGGa -3'
miRNA:   3'- gAGCCGCGa------CCUgCGGGagGCCGCCc -5'
5169 3' -64.8 NC_001798.1 + 2440 0.67 0.47424
Target:  5'- -cCGGCgGCUGGcggcgccagcCGCCCUgcgggucggggcccUCGGCGGGc -3'
miRNA:   3'- gaGCCG-CGACCu---------GCGGGA--------------GGCCGCCC- -5'
5169 3' -64.8 NC_001798.1 + 56062 0.67 0.468127
Target:  5'- aUCGGgGCgGGGCGCUCUCUuccggaGGCGuuuGGa -3'
miRNA:   3'- gAGCCgCGaCCUGCGGGAGG------CCGC---CC- -5'
5169 3' -64.8 NC_001798.1 + 53167 0.67 0.468127
Target:  5'- -gCGGCGCcaacgcGGGCGUCC-CCGaGCGGc -3'
miRNA:   3'- gaGCCGCGa-----CCUGCGGGaGGC-CGCCc -5'
5169 3' -64.8 NC_001798.1 + 35281 0.67 0.468127
Target:  5'- -gCGG-GCgGGGCucggGCUCUCCGGCGGc -3'
miRNA:   3'- gaGCCgCGaCCUG----CGGGAGGCCGCCc -5'
5169 3' -64.8 NC_001798.1 + 151581 0.68 0.459465
Target:  5'- gUCGGCggGCgugGGGCuGCCCUggcgcUCGGcCGGGg -3'
miRNA:   3'- gAGCCG--CGa--CCUG-CGGGA-----GGCC-GCCC- -5'
5169 3' -64.8 NC_001798.1 + 23848 0.68 0.456024
Target:  5'- -aCGGCggGCUGGGCGacagccgccccggCCUCUGGgGGGc -3'
miRNA:   3'- gaGCCG--CGACCUGCg------------GGAGGCCgCCC- -5'
5169 3' -64.8 NC_001798.1 + 9675 0.68 0.450889
Target:  5'- --gGGCGCgggaugGGGgGCUCUCaCGuGCGGGc -3'
miRNA:   3'- gagCCGCGa-----CCUgCGGGAG-GC-CGCCC- -5'
5169 3' -64.8 NC_001798.1 + 171 0.68 0.450889
Target:  5'- -cCGcGCGCcgcgGGGCuGCCUUCCcGCGGGc -3'
miRNA:   3'- gaGC-CGCGa---CCUG-CGGGAGGcCGCCC- -5'
5169 3' -64.8 NC_001798.1 + 9152 0.68 0.450889
Target:  5'- --gGGCGCgGcGcCGCCCgcgCCGGgGGGc -3'
miRNA:   3'- gagCCGCGaC-CuGCGGGa--GGCCgCCC- -5'
5169 3' -64.8 NC_001798.1 + 154509 0.68 0.450889
Target:  5'- -cCGcGCGCcgcgGGGCuGCCUUCCcGCGGGc -3'
miRNA:   3'- gaGC-CGCGa---CCUG-CGGGAGGcCGCCC- -5'
5169 3' -64.8 NC_001798.1 + 116243 0.68 0.450889
Target:  5'- -cCGGCGCUGcugcCGCCCcUCGuGUGGGa -3'
miRNA:   3'- gaGCCGCGACcu--GCGGGaGGC-CGCCC- -5'
5169 3' -64.8 NC_001798.1 + 108933 0.68 0.450889
Target:  5'- aUCGaUGCgGGACaGCCCUCCGGCc-- -3'
miRNA:   3'- gAGCcGCGaCCUG-CGGGAGGCCGccc -5'
5169 3' -64.8 NC_001798.1 + 72666 0.68 0.442401
Target:  5'- uCUCGcacgaggguaacGUGCUGGcCGUCgUgCGGCGGGa -3'
miRNA:   3'- -GAGC------------CGCGACCuGCGGgAgGCCGCCC- -5'
5169 3' -64.8 NC_001798.1 + 48162 0.68 0.442401
Target:  5'- gUCgGGCGcCUGGcggccacgcACGCCCggCUGGCGGcGg -3'
miRNA:   3'- gAG-CCGC-GACC---------UGCGGGa-GGCCGCC-C- -5'
5169 3' -64.8 NC_001798.1 + 40130 0.68 0.434005
Target:  5'- -cCGGgGCUGGGauggcgggUGUCCUCCGaGgGGGc -3'
miRNA:   3'- gaGCCgCGACCU--------GCGGGAGGC-CgCCC- -5'
5169 3' -64.8 NC_001798.1 + 143298 0.68 0.434005
Target:  5'- --aGGgGCcGucCGCCC-CCGGCGGGu -3'
miRNA:   3'- gagCCgCGaCcuGCGGGaGGCCGCCC- -5'
5169 3' -64.8 NC_001798.1 + 77430 0.68 0.434005
Target:  5'- --aGGCGCgccgGGccuGCGCCCagCCGGaGGGg -3'
miRNA:   3'- gagCCGCGa---CC---UGCGGGa-GGCCgCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.