miRNA display CGI


Results 61 - 80 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5169 5' -56.6 NC_001798.1 + 124070 0.7 0.681464
Target:  5'- gACCCCccggGAGGAGgcGGCGC---CUGCGCCc -3'
miRNA:   3'- -UGGGG----CUCCUC--UCGUGcuuGAUGCGG- -5'
5169 5' -56.6 NC_001798.1 + 111621 0.7 0.691465
Target:  5'- aGCCCCGGGGGcGGCA--GACUcGCGUCg -3'
miRNA:   3'- -UGGGGCUCCUcUCGUgcUUGA-UGCGG- -5'
5169 5' -56.6 NC_001798.1 + 152803 0.7 0.701418
Target:  5'- aACCCCGAGG-GAGUA---AUUACGCg -3'
miRNA:   3'- -UGGGGCUCCuCUCGUgcuUGAUGCGg -5'
5169 5' -56.6 NC_001798.1 + 133204 0.7 0.691465
Target:  5'- aACgCCGccGGAGAGCugGAGCUugugGCCc -3'
miRNA:   3'- -UGgGGCu-CCUCUCGugCUUGAug--CGG- -5'
5169 5' -56.6 NC_001798.1 + 21978 0.7 0.701418
Target:  5'- gGCCCCGGGcAGGGCGCcAGCgcuCGCa -3'
miRNA:   3'- -UGGGGCUCcUCUCGUGcUUGau-GCGg -5'
5169 5' -56.6 NC_001798.1 + 149971 0.7 0.721145
Target:  5'- gACgCCGAcGGGGGCGCGGcgcccGCggACGCCg -3'
miRNA:   3'- -UGgGGCUcCUCUCGUGCU-----UGa-UGCGG- -5'
5169 5' -56.6 NC_001798.1 + 73385 0.7 0.721145
Target:  5'- cCCCCGuGGAGGaCgACGAGaugACGCCg -3'
miRNA:   3'- uGGGGCuCCUCUcG-UGCUUga-UGCGG- -5'
5169 5' -56.6 NC_001798.1 + 138161 0.7 0.711314
Target:  5'- cCCCCGGGuccuGGGGGCGCGAcCcGCgGCCg -3'
miRNA:   3'- uGGGGCUC----CUCUCGUGCUuGaUG-CGG- -5'
5169 5' -56.6 NC_001798.1 + 122416 0.7 0.710328
Target:  5'- gGCCCUGAcGGAggccugugccgccGAGCGCGucgUGCGCCc -3'
miRNA:   3'- -UGGGGCU-CCU-------------CUCGUGCuugAUGCGG- -5'
5169 5' -56.6 NC_001798.1 + 93470 0.7 0.680462
Target:  5'- gACCgCGAGGGccacguggugcccGGGUACGAGggGCGCCc -3'
miRNA:   3'- -UGGgGCUCCU-------------CUCGUGCUUgaUGCGG- -5'
5169 5' -56.6 NC_001798.1 + 79993 0.7 0.711314
Target:  5'- cCCCCGGGGGucccAGCGCc-ACUGCGUCg -3'
miRNA:   3'- uGGGGCUCCUc---UCGUGcuUGAUGCGG- -5'
5169 5' -56.6 NC_001798.1 + 3002 0.7 0.681464
Target:  5'- gGCCCCGGGcgcGGGGGCGCG-GCgg-GCCg -3'
miRNA:   3'- -UGGGGCUC---CUCUCGUGCuUGaugCGG- -5'
5169 5' -56.6 NC_001798.1 + 127296 0.7 0.721145
Target:  5'- cGCCCUGGGGcAGAcgcuGCugGAGCUGCu-- -3'
miRNA:   3'- -UGGGGCUCC-UCU----CGugCUUGAUGcgg -5'
5169 5' -56.6 NC_001798.1 + 48119 0.7 0.721145
Target:  5'- cCCCCGGGuGGccggguucaacaAGCGCGucuuCUGCGCCg -3'
miRNA:   3'- uGGGGCUCcUC------------UCGUGCuu--GAUGCGG- -5'
5169 5' -56.6 NC_001798.1 + 46580 0.69 0.750151
Target:  5'- gGCCCCGGGGGcaaacccGCGCGucccguucggGGCUACGaCCa -3'
miRNA:   3'- -UGGGGCUCCUcu-----CGUGC----------UUGAUGC-GG- -5'
5169 5' -56.6 NC_001798.1 + 21810 0.69 0.750151
Target:  5'- cGCCUCGGGGcGGAGCccgcgggaugacGCGGGCcccgggcaggGCGCCa -3'
miRNA:   3'- -UGGGGCUCC-UCUCG------------UGCUUGa---------UGCGG- -5'
5169 5' -56.6 NC_001798.1 + 87992 0.69 0.740572
Target:  5'- cUCCCGGGGGGucGGCAUGcGACgGCGUCu -3'
miRNA:   3'- uGGGGCUCCUC--UCGUGC-UUGaUGCGG- -5'
5169 5' -56.6 NC_001798.1 + 57929 0.69 0.750151
Target:  5'- cCCCCGGGGAucgGAGCgguaggGCGAAaucaucacACGCCg -3'
miRNA:   3'- uGGGGCUCCU---CUCG------UGCUUga------UGCGG- -5'
5169 5' -56.6 NC_001798.1 + 23722 0.69 0.749198
Target:  5'- gGCCCCGGcGGGucGAGCugGAcgccgacGCggccuccgGCGCCu -3'
miRNA:   3'- -UGGGGCU-CCU--CUCGugCU-------UGa-------UGCGG- -5'
5169 5' -56.6 NC_001798.1 + 47858 0.69 0.759629
Target:  5'- cCCCCGGGGGccccguGGGCGCcGGCggGCGCUc -3'
miRNA:   3'- uGGGGCUCCU------CUCGUGcUUGa-UGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.