miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5170 3' -54.3 NC_001798.1 + 138166 0.66 0.956888
Target:  5'- -----gGGU-CCUGgGGGCGcGACCCg -3'
miRNA:   3'- guaucaCCAcGGACgCCUGUuCUGGG- -5'
5170 3' -54.3 NC_001798.1 + 122596 0.66 0.956888
Target:  5'- -----cGcGUGUCUGCGGGCccuGGGCCa -3'
miRNA:   3'- guaucaC-CACGGACGCCUGu--UCUGGg -5'
5170 3' -54.3 NC_001798.1 + 122082 0.66 0.952956
Target:  5'- --aGGcGGUGCUgGCGGGCcugGAGccGCCCg -3'
miRNA:   3'- guaUCaCCACGGaCGCCUG---UUC--UGGG- -5'
5170 3' -54.3 NC_001798.1 + 39876 0.66 0.952141
Target:  5'- --cGGgGGUGCCggcguccucgggGCGGGCcggGGGACCUu -3'
miRNA:   3'- guaUCaCCACGGa-----------CGCCUG---UUCUGGG- -5'
5170 3' -54.3 NC_001798.1 + 113810 0.66 0.948789
Target:  5'- --cAGUGGgUGCUcGgGGACAgaGGACgCCg -3'
miRNA:   3'- guaUCACC-ACGGaCgCCUGU--UCUG-GG- -5'
5170 3' -54.3 NC_001798.1 + 116580 0.66 0.948789
Target:  5'- aCAUGGUGGUcccggagaucGCCccCGGugAGGaguGCCCg -3'
miRNA:   3'- -GUAUCACCA----------CGGacGCCugUUC---UGGG- -5'
5170 3' -54.3 NC_001798.1 + 76001 0.66 0.93974
Target:  5'- -----gGGcGCCgGCGG-CAGGGCCCc -3'
miRNA:   3'- guaucaCCaCGGaCGCCuGUUCUGGG- -5'
5170 3' -54.3 NC_001798.1 + 62456 0.67 0.934852
Target:  5'- --cGGUGG-GCC-GCGcGACGGcGCCCg -3'
miRNA:   3'- guaUCACCaCGGaCGC-CUGUUcUGGG- -5'
5170 3' -54.3 NC_001798.1 + 11184 0.67 0.92972
Target:  5'- --cGGUGGggcggGCCUGCcGAac-GGCCCg -3'
miRNA:   3'- guaUCACCa----CGGACGcCUguuCUGGG- -5'
5170 3' -54.3 NC_001798.1 + 57468 0.67 0.924344
Target:  5'- --gGGgcgGG-GCCgguuugGCGGugGAGGCCUu -3'
miRNA:   3'- guaUCa--CCaCGGa-----CGCCugUUCUGGG- -5'
5170 3' -54.3 NC_001798.1 + 6619 0.67 0.918723
Target:  5'- --cGGgGGgacggGCCggGgGGACGGGGCCCc -3'
miRNA:   3'- guaUCaCCa----CGGa-CgCCUGUUCUGGG- -5'
5170 3' -54.3 NC_001798.1 + 23519 0.67 0.912857
Target:  5'- --------cGCC-GCGGGCGGGACCCu -3'
miRNA:   3'- guaucaccaCGGaCGCCUGUUCUGGG- -5'
5170 3' -54.3 NC_001798.1 + 4091 0.67 0.912857
Target:  5'- --gGGUccGG-GCCgggGCGGGCucGGCCCu -3'
miRNA:   3'- guaUCA--CCaCGGa--CGCCUGuuCUGGG- -5'
5170 3' -54.3 NC_001798.1 + 132149 0.67 0.906749
Target:  5'- --cGG-GG-GCCgGCGGGCGGGGCgCCc -3'
miRNA:   3'- guaUCaCCaCGGaCGCCUGUUCUG-GG- -5'
5170 3' -54.3 NC_001798.1 + 64144 0.67 0.906749
Target:  5'- --gGGUcGGUGCUcGCGGgggagacgGCGGGAUCCa -3'
miRNA:   3'- guaUCA-CCACGGaCGCC--------UGUUCUGGG- -5'
5170 3' -54.3 NC_001798.1 + 12256 0.68 0.9004
Target:  5'- ---cGUGGgGCC-GCGGACGaccAGGCCg -3'
miRNA:   3'- guauCACCaCGGaCGCCUGU---UCUGGg -5'
5170 3' -54.3 NC_001798.1 + 26436 0.68 0.893814
Target:  5'- ----cUGGUGCUgcgcgacgacGCGGACGcGGGCCCg -3'
miRNA:   3'- guaucACCACGGa---------CGCCUGU-UCUGGG- -5'
5170 3' -54.3 NC_001798.1 + 77214 0.68 0.893814
Target:  5'- --cGGUGGacgcgGCCgUGCGGGCGcauGGcGCCCu -3'
miRNA:   3'- guaUCACCa----CGG-ACGCCUGU---UC-UGGG- -5'
5170 3' -54.3 NC_001798.1 + 78551 0.68 0.891792
Target:  5'- uCAUGGcGG-GCCUGCGGgaggcgcuggccgcGCGcgagcgccGGGCCCa -3'
miRNA:   3'- -GUAUCaCCaCGGACGCC--------------UGU--------UCUGGG- -5'
5170 3' -54.3 NC_001798.1 + 45271 0.68 0.886993
Target:  5'- --cGGUGGggGCC-GCGGACAAGucggcggacguGCUCg -3'
miRNA:   3'- guaUCACCa-CGGaCGCCUGUUC-----------UGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.