miRNA display CGI


Results 1 - 20 of 308 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5170 5' -50.4 NC_001798.1 + 47274 0.66 0.99848
Target:  5'- cGGAAGUCgGGCCuguucggGGCGugucuguccguUGCCCCc -3'
miRNA:   3'- -CCUUUAGgCUGG-------CUGCuuuu-------GCGGGG- -5'
5170 5' -50.4 NC_001798.1 + 131468 0.66 0.998395
Target:  5'- gGGGGAUuuGGCCGAgUGGGuu--CCCCg -3'
miRNA:   3'- -CCUUUAggCUGGCU-GCUUuugcGGGG- -5'
5170 5' -50.4 NC_001798.1 + 43011 0.66 0.998395
Target:  5'- cGGccaggCCGcCCGGgGGGAGCgcgggGCCCCg -3'
miRNA:   3'- -CCuuua-GGCuGGCUgCUUUUG-----CGGGG- -5'
5170 5' -50.4 NC_001798.1 + 70993 0.66 0.998395
Target:  5'- gGGAGAUcgacCCGGCUaucAUGAuccCGCCCCu -3'
miRNA:   3'- -CCUUUA----GGCUGGc--UGCUuuuGCGGGG- -5'
5170 5' -50.4 NC_001798.1 + 77666 0.66 0.998395
Target:  5'- -----gCCGACCugacGGCGAAGaugGCGgCCCa -3'
miRNA:   3'- ccuuuaGGCUGG----CUGCUUU---UGCgGGG- -5'
5170 5' -50.4 NC_001798.1 + 78984 0.66 0.998395
Target:  5'- uGGAAGUCCc-CCGAgGGGuucCGCgCCa -3'
miRNA:   3'- -CCUUUAGGcuGGCUgCUUuu-GCGgGG- -5'
5170 5' -50.4 NC_001798.1 + 97542 0.66 0.998395
Target:  5'- cGGAGGcgUGGC--GCGggGACGCCCg -3'
miRNA:   3'- -CCUUUagGCUGgcUGCuuUUGCGGGg -5'
5170 5' -50.4 NC_001798.1 + 135502 0.66 0.998395
Target:  5'- cGGAcgCCGcGCaCGGCGcgauccAGGACGCCCg -3'
miRNA:   3'- cCUUuaGGC-UG-GCUGC------UUUUGCGGGg -5'
5170 5' -50.4 NC_001798.1 + 143298 0.66 0.998395
Target:  5'- aGGGGccGUCCGcccCCGGCGGGu-CGCCggCCa -3'
miRNA:   3'- -CCUU--UAGGCu--GGCUGCUUuuGCGG--GG- -5'
5170 5' -50.4 NC_001798.1 + 144546 0.66 0.998395
Target:  5'- gGGAGAcCCG-CCGugGggGgGCGUUCg -3'
miRNA:   3'- -CCUUUaGGCuGGCugCuuU-UGCGGGg -5'
5170 5' -50.4 NC_001798.1 + 62881 0.66 0.998395
Target:  5'- cGAGuagCCGgaACgGAgGAAAcgcGCGCCCCc -3'
miRNA:   3'- cCUUua-GGC--UGgCUgCUUU---UGCGGGG- -5'
5170 5' -50.4 NC_001798.1 + 68275 0.66 0.998395
Target:  5'- cGGAAcgCCGACCGcCccAAACcGCUCg -3'
miRNA:   3'- -CCUUuaGGCUGGCuGcuUUUG-CGGGg -5'
5170 5' -50.4 NC_001798.1 + 134738 0.66 0.998395
Target:  5'- cGGGuucUCCGccCCGGCGcuGGuCGCCCUc -3'
miRNA:   3'- -CCUuu-AGGCu-GGCUGCuuUU-GCGGGG- -5'
5170 5' -50.4 NC_001798.1 + 37007 0.66 0.99808
Target:  5'- -aGAGUgUGGCCGGCGcGAGCGCgggCCa -3'
miRNA:   3'- ccUUUAgGCUGGCUGCuUUUGCGg--GG- -5'
5170 5' -50.4 NC_001798.1 + 145721 0.66 0.99808
Target:  5'- cGAGccCCGGCCc-CGGcccGCGCCCCg -3'
miRNA:   3'- cCUUuaGGCUGGcuGCUuu-UGCGGGG- -5'
5170 5' -50.4 NC_001798.1 + 2240 0.66 0.99808
Target:  5'- cGGg---CCGAaggCGGCGGGcGCGCCgCCg -3'
miRNA:   3'- -CCuuuaGGCUg--GCUGCUUuUGCGG-GG- -5'
5170 5' -50.4 NC_001798.1 + 24688 0.66 0.99808
Target:  5'- cGGAGcCCGGCCcGCc---GCGCCCCc -3'
miRNA:   3'- cCUUUaGGCUGGcUGcuuuUGCGGGG- -5'
5170 5' -50.4 NC_001798.1 + 73231 0.66 0.99808
Target:  5'- cGGccuUCCG-CCGGCccGggGGC-CCCCg -3'
miRNA:   3'- -CCuuuAGGCuGGCUG--CuuUUGcGGGG- -5'
5170 5' -50.4 NC_001798.1 + 84003 0.66 0.99808
Target:  5'- -aGGAUCCG-CCGcguGCGAAcGGCGUCCUc -3'
miRNA:   3'- ccUUUAGGCuGGC---UGCUU-UUGCGGGG- -5'
5170 5' -50.4 NC_001798.1 + 28917 0.66 0.99808
Target:  5'- ----cUCCGAagaGACGAugggaGCCCCg -3'
miRNA:   3'- ccuuuAGGCUgg-CUGCUuuug-CGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.