miRNA display CGI


Results 1 - 20 of 308 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5170 5' -50.4 NC_001798.1 + 133 0.71 0.95401
Target:  5'- cGGAg--CCGGCCGcucccccGCGGGcgcCGCCCCu -3'
miRNA:   3'- -CCUuuaGGCUGGC-------UGCUUuu-GCGGGG- -5'
5170 5' -50.4 NC_001798.1 + 1362 0.7 0.968484
Target:  5'- cGGGccgCCGcGCaCGGCGuc-GCGCCCCa -3'
miRNA:   3'- -CCUuuaGGC-UG-GCUGCuuuUGCGGGG- -5'
5170 5' -50.4 NC_001798.1 + 1469 0.68 0.986878
Target:  5'- aGAAGUCCGGCgCGcCGG--GCGCCa- -3'
miRNA:   3'- cCUUUAGGCUG-GCuGCUuuUGCGGgg -5'
5170 5' -50.4 NC_001798.1 + 1909 0.74 0.859916
Target:  5'- aGGAAcUCCacggcGCCGGCGAAGGCcagGUCCCg -3'
miRNA:   3'- -CCUUuAGGc----UGGCUGCUUUUG---CGGGG- -5'
5170 5' -50.4 NC_001798.1 + 2240 0.66 0.99808
Target:  5'- cGGg---CCGAaggCGGCGGGcGCGCCgCCg -3'
miRNA:   3'- -CCuuuaGGCUg--GCUGCUUuUGCGG-GG- -5'
5170 5' -50.4 NC_001798.1 + 2473 0.68 0.991054
Target:  5'- cGGGGcccucggCgGGCCGGCGGGucAGCGCCgCg -3'
miRNA:   3'- -CCUUua-----GgCUGGCUGCUU--UUGCGGgG- -5'
5170 5' -50.4 NC_001798.1 + 2561 0.66 0.997293
Target:  5'- gGGAGGggCGGCCGcgggGCGggGgGCGUCCg -3'
miRNA:   3'- -CCUUUagGCUGGC----UGCuuU-UGCGGGg -5'
5170 5' -50.4 NC_001798.1 + 2615 0.76 0.743758
Target:  5'- cGGGGcgCCGcCCGGCG---GCGCCCUg -3'
miRNA:   3'- -CCUUuaGGCuGGCUGCuuuUGCGGGG- -5'
5170 5' -50.4 NC_001798.1 + 2984 0.66 0.997293
Target:  5'- cGGGGcggCCGGCCcGCGG----GCCCCg -3'
miRNA:   3'- -CCUUua-GGCUGGcUGCUuuugCGGGG- -5'
5170 5' -50.4 NC_001798.1 + 3210 0.75 0.83567
Target:  5'- cGGAGG-CgGGCgCGGCGcucAGGCGCCCCa -3'
miRNA:   3'- -CCUUUaGgCUG-GCUGCu--UUUGCGGGG- -5'
5170 5' -50.4 NC_001798.1 + 3289 0.68 0.992184
Target:  5'- -----gUCGGCCGGCGAcgcCGCCgCCg -3'
miRNA:   3'- ccuuuaGGCUGGCUGCUuuuGCGG-GG- -5'
5170 5' -50.4 NC_001798.1 + 3988 0.66 0.997293
Target:  5'- -----cUCGACCGcCGggGcCGCCCg -3'
miRNA:   3'- ccuuuaGGCUGGCuGCuuUuGCGGGg -5'
5170 5' -50.4 NC_001798.1 + 4088 0.73 0.882259
Target:  5'- cGGggGUCCgGGCCGggGCGGGcuCGgCCCu -3'
miRNA:   3'- -CCuuUAGG-CUGGC--UGCUUuuGCgGGG- -5'
5170 5' -50.4 NC_001798.1 + 4347 0.67 0.993198
Target:  5'- aGAGGcggCCGagcGCCGGCGggGgGCGCgCCg -3'
miRNA:   3'- cCUUUa--GGC---UGGCUGCuuU-UGCGgGG- -5'
5170 5' -50.4 NC_001798.1 + 4419 0.66 0.997976
Target:  5'- cGGggGUCgCGGCgacaGGCuggccaugggguccGGGuACGCCCCg -3'
miRNA:   3'- -CCuuUAG-GCUGg---CUG--------------CUUuUGCGGGG- -5'
5170 5' -50.4 NC_001798.1 + 4899 0.74 0.855214
Target:  5'- cGGAGAUCCGGggccgccggucgucuCCGccgcggccCGGAGACGUCCCc -3'
miRNA:   3'- -CCUUUAGGCU---------------GGCu-------GCUUUUGCGGGG- -5'
5170 5' -50.4 NC_001798.1 + 5206 0.7 0.968484
Target:  5'- ----cUCCGugUgGACGAu--CGCCCCg -3'
miRNA:   3'- ccuuuAGGCugG-CUGCUuuuGCGGGG- -5'
5170 5' -50.4 NC_001798.1 + 5287 0.8 0.559165
Target:  5'- aGGAGGagCGAUCGACGccgccGCGCCCCg -3'
miRNA:   3'- -CCUUUagGCUGGCUGCuuu--UGCGGGG- -5'
5170 5' -50.4 NC_001798.1 + 5589 0.74 0.852037
Target:  5'- -------gGGCCGGCGAGGuCGCCCCg -3'
miRNA:   3'- ccuuuaggCUGGCUGCUUUuGCGGGG- -5'
5170 5' -50.4 NC_001798.1 + 5610 0.67 0.993198
Target:  5'- --uGGUCCG-CgGGCGGcucCGCCCCa -3'
miRNA:   3'- ccuUUAGGCuGgCUGCUuuuGCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.