miRNA display CGI


Results 1 - 20 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5171 3' -57.1 NC_001798.1 + 153665 0.66 0.886164
Target:  5'- -cGCGCGGCGCGucCG-CGGGCGg-- -3'
miRNA:   3'- acCGCGCUGUGUuuGUgGCCCGCaga -5'
5171 3' -57.1 NC_001798.1 + 133159 0.66 0.886164
Target:  5'- cGGCGgcuuuaCGAcCACu-ACGCCacGGGCGUCa -3'
miRNA:   3'- aCCGC------GCU-GUGuuUGUGG--CCCGCAGa -5'
5171 3' -57.1 NC_001798.1 + 54126 0.66 0.886164
Target:  5'- --aCGCGACGCu--UACCGGGUauGUCg -3'
miRNA:   3'- accGCGCUGUGuuuGUGGCCCG--CAGa -5'
5171 3' -57.1 NC_001798.1 + 85714 0.66 0.886164
Target:  5'- aGGC-CGACGCccuCcCCGGGCGcCg -3'
miRNA:   3'- aCCGcGCUGUGuuuGuGGCCCGCaGa -5'
5171 3' -57.1 NC_001798.1 + 2610 0.66 0.88548
Target:  5'- gGGCGCGGgGCGccgcccggcGGCGCCcuggccgGGGCGgggCUc -3'
miRNA:   3'- aCCGCGCUgUGU---------UUGUGG-------CCCGCa--GA- -5'
5171 3' -57.1 NC_001798.1 + 40198 0.66 0.879232
Target:  5'- aGGaGCGGCACcGACgcgcaACCGGG-GUCg -3'
miRNA:   3'- aCCgCGCUGUGuUUG-----UGGCCCgCAGa -5'
5171 3' -57.1 NC_001798.1 + 124745 0.66 0.879232
Target:  5'- aGGCGUGAUcucauCAAACA-CGGGCucgGUCg -3'
miRNA:   3'- aCCGCGCUGu----GUUUGUgGCCCG---CAGa -5'
5171 3' -57.1 NC_001798.1 + 21817 0.66 0.879232
Target:  5'- gGGCGgagcccgcgggaUGACGCGGGCcCCGGGCa--- -3'
miRNA:   3'- aCCGC------------GCUGUGUUUGuGGCCCGcaga -5'
5171 3' -57.1 NC_001798.1 + 25728 0.66 0.879232
Target:  5'- cGGCGCccccGACGuCucGGCGCUGGGCG-Cg -3'
miRNA:   3'- aCCGCG----CUGU-Gu-UUGUGGCCCGCaGa -5'
5171 3' -57.1 NC_001798.1 + 1876 0.66 0.872083
Target:  5'- aGGCgGCGGuCGCAGGCGCCGGccaGCa--- -3'
miRNA:   3'- aCCG-CGCU-GUGUUUGUGGCC---CGcaga -5'
5171 3' -57.1 NC_001798.1 + 40891 0.66 0.872083
Target:  5'- gGGCGaugaugGACACgAAACACCaGGUGUg- -3'
miRNA:   3'- aCCGCg-----CUGUG-UUUGUGGcCCGCAga -5'
5171 3' -57.1 NC_001798.1 + 45705 0.66 0.872083
Target:  5'- -aGCGaCGACAgaacggacaacCGAGCGCCGGGCa--- -3'
miRNA:   3'- acCGC-GCUGU-----------GUUUGUGGCCCGcaga -5'
5171 3' -57.1 NC_001798.1 + 35593 0.66 0.872083
Target:  5'- cGGCuGCGGcCGCGGGCuCCGGGgG-CUc -3'
miRNA:   3'- aCCG-CGCU-GUGUUUGuGGCCCgCaGA- -5'
5171 3' -57.1 NC_001798.1 + 86906 0.66 0.872083
Target:  5'- cGGCGUGG----AGCGCCGGGCcUCc -3'
miRNA:   3'- aCCGCGCUguguUUGUGGCCCGcAGa -5'
5171 3' -57.1 NC_001798.1 + 2210 0.66 0.872083
Target:  5'- -cGCGCGGCGCAGcggGC-CCGaGGCG-Cg -3'
miRNA:   3'- acCGCGCUGUGUU---UGuGGC-CCGCaGa -5'
5171 3' -57.1 NC_001798.1 + 104081 0.66 0.871357
Target:  5'- -aGCGCGgugaggcGCACGAGCGCCGccuGGCGg-- -3'
miRNA:   3'- acCGCGC-------UGUGUUUGUGGC---CCGCaga -5'
5171 3' -57.1 NC_001798.1 + 1544 0.66 0.867692
Target:  5'- cGGCGCGGCgguacucgcgcggggACAugGGCACCaGcGUGUCg -3'
miRNA:   3'- aCCGCGCUG---------------UGU--UUGUGGcC-CGCAGa -5'
5171 3' -57.1 NC_001798.1 + 25055 0.66 0.866953
Target:  5'- aGGCGCGcaaGCGCAAgagccccGCcccggccagggcgccGCCGGGCGg-- -3'
miRNA:   3'- aCCGCGC---UGUGUU-------UG---------------UGGCCCGCaga -5'
5171 3' -57.1 NC_001798.1 + 122065 0.66 0.864723
Target:  5'- gGGCGCGu--CGGACGCgGaGGCGgugCUg -3'
miRNA:   3'- aCCGCGCuguGUUUGUGgC-CCGCa--GA- -5'
5171 3' -57.1 NC_001798.1 + 47075 0.66 0.864723
Target:  5'- cGGgGCGACA---GCGCCGguguGGUGUCc -3'
miRNA:   3'- aCCgCGCUGUguuUGUGGC----CCGCAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.