miRNA display CGI


Results 1 - 20 of 572 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5171 5' -60.3 NC_001798.1 + 121985 0.66 0.796254
Target:  5'- cCCAagcacGCgGCCUCCGGCGUCGccucGgGGCUCCg -3'
miRNA:   3'- -GGU-----UG-UGGGGGCUGCGGU----CgCUGGGG- -5'
5171 5' -60.3 NC_001798.1 + 10681 0.66 0.796254
Target:  5'- aCAGCGCCaCCCacgacgGGCGCaGGgGACCgCa -3'
miRNA:   3'- gGUUGUGG-GGG------CUGCGgUCgCUGGgG- -5'
5171 5' -60.3 NC_001798.1 + 65595 0.66 0.796254
Target:  5'- gCAGCgcuggGCCUCCu-CGCCGGCGaggacGCCCUu -3'
miRNA:   3'- gGUUG-----UGGGGGcuGCGGUCGC-----UGGGG- -5'
5171 5' -60.3 NC_001798.1 + 85655 0.66 0.796254
Target:  5'- uCCAcuGCugCUuccggaCCGACGgCGGgGugCCCg -3'
miRNA:   3'- -GGU--UGugGG------GGCUGCgGUCgCugGGG- -5'
5171 5' -60.3 NC_001798.1 + 129705 0.66 0.796254
Target:  5'- aCCGGCgcgcaucggACCCCCcaucGCGUCAcaccaacggcGgGACCCCg -3'
miRNA:   3'- -GGUUG---------UGGGGGc---UGCGGU----------CgCUGGGG- -5'
5171 5' -60.3 NC_001798.1 + 26568 0.66 0.796254
Target:  5'- gCC-ACGCCgCCGAgGC--GCGAgCCCg -3'
miRNA:   3'- -GGuUGUGGgGGCUgCGguCGCUgGGG- -5'
5171 5' -60.3 NC_001798.1 + 43034 0.66 0.796254
Target:  5'- gCGGgGCCCCgGGCGCaaauGCGGCgCg -3'
miRNA:   3'- gGUUgUGGGGgCUGCGgu--CGCUGgGg -5'
5171 5' -60.3 NC_001798.1 + 54357 0.66 0.796254
Target:  5'- uCCuGCGCCUCgCGGCGUC--CGGCCCa -3'
miRNA:   3'- -GGuUGUGGGG-GCUGCGGucGCUGGGg -5'
5171 5' -60.3 NC_001798.1 + 102820 0.66 0.796254
Target:  5'- aCCcGCG-CUCCGGCGCaggGGCaGACUCCg -3'
miRNA:   3'- -GGuUGUgGGGGCUGCGg--UCG-CUGGGG- -5'
5171 5' -60.3 NC_001798.1 + 76857 0.66 0.796254
Target:  5'- -aGGCGugUCCGGCcguGCUGGCGACCCUg -3'
miRNA:   3'- ggUUGUggGGGCUG---CGGUCGCUGGGG- -5'
5171 5' -60.3 NC_001798.1 + 52502 0.66 0.796254
Target:  5'- gCCGGCGCagggaCGACG-CGGCGGCCgCg -3'
miRNA:   3'- -GGUUGUGggg--GCUGCgGUCGCUGGgG- -5'
5171 5' -60.3 NC_001798.1 + 143602 0.66 0.796254
Target:  5'- aUCAAgACCCCgGAUGUCGGCaucuuauaccGACCa- -3'
miRNA:   3'- -GGUUgUGGGGgCUGCGGUCG----------CUGGgg -5'
5171 5' -60.3 NC_001798.1 + 130513 0.66 0.796254
Target:  5'- gCCAG-GCCgaCGAUGCCGGUggcggcgauGGCCCCg -3'
miRNA:   3'- -GGUUgUGGggGCUGCGGUCG---------CUGGGG- -5'
5171 5' -60.3 NC_001798.1 + 122765 0.66 0.796254
Target:  5'- ---cCGCCCCCGACGCguucuuucaCAccGCGuacGCCCUg -3'
miRNA:   3'- gguuGUGGGGGCUGCG---------GU--CGC---UGGGG- -5'
5171 5' -60.3 NC_001798.1 + 119458 0.66 0.796254
Target:  5'- aCGGCGCCgCCGuuguGCaauCCGGCGacaugGCCCCg -3'
miRNA:   3'- gGUUGUGGgGGC----UGc--GGUCGC-----UGGGG- -5'
5171 5' -60.3 NC_001798.1 + 17342 0.66 0.793666
Target:  5'- gCCAGgACCUcgggggcguuuguaUCGAuggUGCCuGCGAUCCCg -3'
miRNA:   3'- -GGUUgUGGG--------------GGCU---GCGGuCGCUGGGG- -5'
5171 5' -60.3 NC_001798.1 + 51980 0.66 0.787581
Target:  5'- cCCAcccCGgCCCCGACGCC-GCGGUCUUu -3'
miRNA:   3'- -GGUu--GUgGGGGCUGCGGuCGCUGGGG- -5'
5171 5' -60.3 NC_001798.1 + 127029 0.66 0.787581
Target:  5'- gCCGGCcguCCUggCCGACuuuaGCCuGGUGACCCUg -3'
miRNA:   3'- -GGUUGu--GGG--GGCUG----CGG-UCGCUGGGG- -5'
5171 5' -60.3 NC_001798.1 + 51503 0.66 0.787581
Target:  5'- gCGGCAuucCCCCUGGacCGCC--UGACCCCc -3'
miRNA:   3'- gGUUGU---GGGGGCU--GCGGucGCUGGGG- -5'
5171 5' -60.3 NC_001798.1 + 25513 0.66 0.787581
Target:  5'- gCGGCGgCCUgGauGCGCCAG-GugCCCg -3'
miRNA:   3'- gGUUGUgGGGgC--UGCGGUCgCugGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.