miRNA display CGI


Results 21 - 40 of 572 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5171 5' -60.3 NC_001798.1 + 134262 0.66 0.787581
Target:  5'- uCUGGCGgCCCUGgaGCGCCAGaCGGgCCg -3'
miRNA:   3'- -GGUUGUgGGGGC--UGCGGUC-GCUgGGg -5'
5171 5' -60.3 NC_001798.1 + 25513 0.66 0.787581
Target:  5'- gCGGCGgCCUgGauGCGCCAG-GugCCCg -3'
miRNA:   3'- gGUUGUgGGGgC--UGCGGUCgCugGGG- -5'
5171 5' -60.3 NC_001798.1 + 51503 0.66 0.787581
Target:  5'- gCGGCAuucCCCCUGGacCGCC--UGACCCCc -3'
miRNA:   3'- gGUUGU---GGGGGCU--GCGGucGCUGGGG- -5'
5171 5' -60.3 NC_001798.1 + 127029 0.66 0.787581
Target:  5'- gCCGGCcguCCUggCCGACuuuaGCCuGGUGACCCUg -3'
miRNA:   3'- -GGUUGu--GGG--GGCUG----CGG-UCGCUGGGG- -5'
5171 5' -60.3 NC_001798.1 + 51980 0.66 0.787581
Target:  5'- cCCAcccCGgCCCCGACGCC-GCGGUCUUu -3'
miRNA:   3'- -GGUu--GUgGGGGCUGCGGuCGCUGGGG- -5'
5171 5' -60.3 NC_001798.1 + 76910 0.66 0.787581
Target:  5'- aCCGAC-CUggCCGAUGCCGuccGgGGCCCCc -3'
miRNA:   3'- -GGUUGuGGg-GGCUGCGGU---CgCUGGGG- -5'
5171 5' -60.3 NC_001798.1 + 124197 0.66 0.786707
Target:  5'- cCCAGCGCaCCCUGGcCGuCCGgggggacGCGAgCCUg -3'
miRNA:   3'- -GGUUGUG-GGGGCU-GC-GGU-------CGCUgGGG- -5'
5171 5' -60.3 NC_001798.1 + 62254 0.66 0.784954
Target:  5'- -gGAC-CgCCCCGAgccgaucccaggccCGCCgGGCGGCCCg -3'
miRNA:   3'- ggUUGuG-GGGGCU--------------GCGG-UCGCUGGGg -5'
5171 5' -60.3 NC_001798.1 + 57638 0.66 0.784076
Target:  5'- gCCAGCACCa-CGACcacacccacccaCAGCaGGCCCCa -3'
miRNA:   3'- -GGUUGUGGggGCUGcg----------GUCG-CUGGGG- -5'
5171 5' -60.3 NC_001798.1 + 102629 0.66 0.782316
Target:  5'- aCAAauaACUCCCGuCGCCGgGCGGCggaggggccggggcgCCCg -3'
miRNA:   3'- gGUUg--UGGGGGCuGCGGU-CGCUG---------------GGG- -5'
5171 5' -60.3 NC_001798.1 + 81212 0.66 0.778781
Target:  5'- aCCAGCGCCCCCu-CGCCGaCGAg--- -3'
miRNA:   3'- -GGUUGUGGGGGcuGCGGUcGCUgggg -5'
5171 5' -60.3 NC_001798.1 + 97313 0.66 0.778781
Target:  5'- -gGACGCCCUgaucauCGGCgGCCAgGCGACgucgCCCg -3'
miRNA:   3'- ggUUGUGGGG------GCUG-CGGU-CGCUG----GGG- -5'
5171 5' -60.3 NC_001798.1 + 114819 0.66 0.778781
Target:  5'- gCGACGCagccgUCCGugGCC-GUG-CCCCg -3'
miRNA:   3'- gGUUGUGg----GGGCugCGGuCGCuGGGG- -5'
5171 5' -60.3 NC_001798.1 + 118858 0.66 0.778781
Target:  5'- gCAACAccuCCCCCGuCGaccucugcaaCGGgGAUCCCg -3'
miRNA:   3'- gGUUGU---GGGGGCuGCg---------GUCgCUGGGG- -5'
5171 5' -60.3 NC_001798.1 + 121507 0.66 0.778781
Target:  5'- gCGACGCCCaaGGCGUguaCGACCCg -3'
miRNA:   3'- gGUUGUGGGggCUGCGgucGCUGGGg -5'
5171 5' -60.3 NC_001798.1 + 133782 0.66 0.778781
Target:  5'- aCGcACGCCUCCGGCGCCca--GCCCa -3'
miRNA:   3'- gGU-UGUGGGGGCUGCGGucgcUGGGg -5'
5171 5' -60.3 NC_001798.1 + 1357 0.66 0.778781
Target:  5'- uCCGccGgGCCgCCG-CGCaCGGCGucgcGCCCCa -3'
miRNA:   3'- -GGU--UgUGGgGGCuGCG-GUCGC----UGGGG- -5'
5171 5' -60.3 NC_001798.1 + 105631 0.66 0.778781
Target:  5'- aCGGCGCUCCgGGaagaauugGCCGGCG-CCCa -3'
miRNA:   3'- gGUUGUGGGGgCUg-------CGGUCGCuGGGg -5'
5171 5' -60.3 NC_001798.1 + 150043 0.66 0.778781
Target:  5'- uCCGGgGCCCggcgCGGCGCCGcccucuUGGCCCCc -3'
miRNA:   3'- -GGUUgUGGGg---GCUGCGGUc-----GCUGGGG- -5'
5171 5' -60.3 NC_001798.1 + 27638 0.66 0.778781
Target:  5'- cCCGcCGCCgCCGccCGCCuucGCGcCCCCc -3'
miRNA:   3'- -GGUuGUGGgGGCu-GCGGu--CGCuGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.