miRNA display CGI


Results 1 - 20 of 46 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5172 3' -54 NC_001798.1 + 106012 0.66 0.957908
Target:  5'- gGGUcGCuCUC-UGGuGggGCcggAUGACCCgCCg -3'
miRNA:   3'- -CCA-UG-GAGuACC-CuuCG---UACUGGG-GG- -5'
5172 3' -54 NC_001798.1 + 52043 0.66 0.957908
Target:  5'- gGGUGCgcgcgCUCcUGGGGcgcgacugucGCGUGGCCgCCCg -3'
miRNA:   3'- -CCAUG-----GAGuACCCUu---------CGUACUGG-GGG- -5'
5172 3' -54 NC_001798.1 + 8049 0.66 0.957908
Target:  5'- cGUGCgUU-UGGGu-GCG-GACCCCCg -3'
miRNA:   3'- cCAUGgAGuACCCuuCGUaCUGGGGG- -5'
5172 3' -54 NC_001798.1 + 123016 0.66 0.957908
Target:  5'- --cGCUUCAUGGaGGGCA--GCCCCUc -3'
miRNA:   3'- ccaUGGAGUACCcUUCGUacUGGGGG- -5'
5172 3' -54 NC_001798.1 + 47218 0.66 0.957533
Target:  5'- ---cCCUguUGGGAaggggugGGCGUGucguugggcgGCCCCCg -3'
miRNA:   3'- ccauGGAguACCCU-------UCGUAC----------UGGGGG- -5'
5172 3' -54 NC_001798.1 + 31850 0.66 0.956396
Target:  5'- cGGUGCCgccccccacgccgCGgaggGGGcGGCGgcccGCCCCCg -3'
miRNA:   3'- -CCAUGGa------------GUa---CCCuUCGUac--UGGGGG- -5'
5172 3' -54 NC_001798.1 + 107058 0.66 0.956396
Target:  5'- uGGcuCCUCAUaucggggGGGAGGCuGUGggcccgcaagccccGCCCCCg -3'
miRNA:   3'- -CCauGGAGUA-------CCCUUCG-UAC--------------UGGGGG- -5'
5172 3' -54 NC_001798.1 + 154303 0.66 0.954061
Target:  5'- cGGgcCCUCuuaaGGGGcggcGGCAggacgggGACUCCCg -3'
miRNA:   3'- -CCauGGAGua--CCCU----UCGUa------CUGGGGG- -5'
5172 3' -54 NC_001798.1 + 117123 0.66 0.954061
Target:  5'- --cGCgCUCAUGGcGggGUacuucaagAUGAgCCCCg -3'
miRNA:   3'- ccaUG-GAGUACC-CuuCG--------UACUgGGGG- -5'
5172 3' -54 NC_001798.1 + 70439 0.66 0.954061
Target:  5'- uGGUGCaccgCAUGGcGGuGGCGcuccccgaGACCCCCg -3'
miRNA:   3'- -CCAUGga--GUACC-CU-UCGUa-------CUGGGGG- -5'
5172 3' -54 NC_001798.1 + 68306 0.67 0.949983
Target:  5'- cGGUGCagaCAgcgGGGGcugucgucuGGCAUGACaCCCa -3'
miRNA:   3'- -CCAUGga-GUa--CCCU---------UCGUACUGgGGG- -5'
5172 3' -54 NC_001798.1 + 15948 0.67 0.945672
Target:  5'- cGGggGCCcaAUGGGGcGGCA-GACCCCg -3'
miRNA:   3'- -CCa-UGGagUACCCU-UCGUaCUGGGGg -5'
5172 3' -54 NC_001798.1 + 17916 0.67 0.945227
Target:  5'- uGGUGucgagcuCUUCcgGGGugaacccCGUGGCCCCCa -3'
miRNA:   3'- -CCAU-------GGAGuaCCCuuc----GUACUGGGGG- -5'
5172 3' -54 NC_001798.1 + 67556 0.67 0.936334
Target:  5'- uGGUcGCCgccagGGGggGCGaccucgGGCUCCCg -3'
miRNA:   3'- -CCA-UGGagua-CCCuuCGUa-----CUGGGGG- -5'
5172 3' -54 NC_001798.1 + 109954 0.67 0.935842
Target:  5'- cGG-ACgUCAUGGcacaacaGAcccgcGGCGUGGCCUCCg -3'
miRNA:   3'- -CCaUGgAGUACC-------CU-----UCGUACUGGGGG- -5'
5172 3' -54 NC_001798.1 + 76594 0.67 0.931305
Target:  5'- cGUACgUCGacGGggGCGggcUGuCCCCCg -3'
miRNA:   3'- cCAUGgAGUacCCuuCGU---ACuGGGGG- -5'
5172 3' -54 NC_001798.1 + 30688 0.67 0.926034
Target:  5'- cGUACCUgAUaGuGGGCGUGACCgCCa -3'
miRNA:   3'- cCAUGGAgUAcCcUUCGUACUGGgGG- -5'
5172 3' -54 NC_001798.1 + 39904 0.67 0.925494
Target:  5'- cGGgggACCUU-UGGGAAcGCcgcgucgAUGGCCUCCg -3'
miRNA:   3'- -CCa--UGGAGuACCCUU-CG-------UACUGGGGG- -5'
5172 3' -54 NC_001798.1 + 78966 0.68 0.920521
Target:  5'- --cGCgUCcgGGGggGCGccUGGaaguCCCCCg -3'
miRNA:   3'- ccaUGgAGuaCCCuuCGU--ACU----GGGGG- -5'
5172 3' -54 NC_001798.1 + 102315 0.68 0.914766
Target:  5'- --cACCUCGUGucGGcGGCGcuucgccGACCCCCg -3'
miRNA:   3'- ccaUGGAGUAC--CCuUCGUa------CUGGGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.