Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5172 | 3' | -54 | NC_001798.1 | + | 107168 | 1.14 | 0.002375 |
Target: 5'- cGGUACCUCAUGGGAAGCAUGACCCCCc -3' miRNA: 3'- -CCAUGGAGUACCCUUCGUACUGGGGG- -5' |
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5172 | 3' | -54 | NC_001798.1 | + | 39487 | 0.79 | 0.384621 |
Target: 5'- cGUGCCUCGUGGcc-GCG-GGCCCCCg -3' miRNA: 3'- cCAUGGAGUACCcuuCGUaCUGGGGG- -5' |
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5172 | 3' | -54 | NC_001798.1 | + | 63457 | 0.77 | 0.436909 |
Target: 5'- --cGCCUC--GGGcuuGGCGUGGCCCCCg -3' miRNA: 3'- ccaUGGAGuaCCCu--UCGUACUGGGGG- -5' |
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5172 | 3' | -54 | NC_001798.1 | + | 135217 | 0.74 | 0.603206 |
Target: 5'- cGG-GCCUCG-GGGAGGCcgGGCUgCCg -3' miRNA: 3'- -CCaUGGAGUaCCCUUCGuaCUGGgGG- -5' |
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5172 | 3' | -54 | NC_001798.1 | + | 23787 | 0.74 | 0.603206 |
Target: 5'- gGGUACgUCAgcGGGGAGcCGUGGCCCg- -3' miRNA: 3'- -CCAUGgAGUa-CCCUUC-GUACUGGGgg -5' |
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5172 | 3' | -54 | NC_001798.1 | + | 7438 | 0.74 | 0.613483 |
Target: 5'- gGGUGCC-CA-GGG-AGCcuaGACCCCCa -3' miRNA: 3'- -CCAUGGaGUaCCCuUCGua-CUGGGGG- -5' |
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5172 | 3' | -54 | NC_001798.1 | + | 2525 | 0.73 | 0.695532 |
Target: 5'- cGGcgGCgUCGgcggggcGGGggGCGcGGCCCCCg -3' miRNA: 3'- -CCa-UGgAGUa------CCCuuCGUaCUGGGGG- -5' |
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5172 | 3' | -54 | NC_001798.1 | + | 103964 | 0.72 | 0.705639 |
Target: 5'- cGUGCCUgcUGGGcGAGCAgcccaGGCCCCUg -3' miRNA: 3'- cCAUGGAguACCC-UUCGUa----CUGGGGG- -5' |
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5172 | 3' | -54 | NC_001798.1 | + | 101826 | 0.72 | 0.735547 |
Target: 5'- gGGUAagCUCGcggcgggGGGAGGCGUGGgUCCCg -3' miRNA: 3'- -CCAUg-GAGUa------CCCUUCGUACUgGGGG- -5' |
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5172 | 3' | -54 | NC_001798.1 | + | 70178 | 0.71 | 0.764635 |
Target: 5'- aGGU-CCUguUGGGGAGCcUGACCaaccuCCg -3' miRNA: 3'- -CCAuGGAguACCCUUCGuACUGGg----GG- -5' |
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5172 | 3' | -54 | NC_001798.1 | + | 80999 | 0.7 | 0.810612 |
Target: 5'- cGGU--CUUGUGGGAAGCcccgGAgCCCCCc -3' miRNA: 3'- -CCAugGAGUACCCUUCGua--CU-GGGGG- -5' |
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5172 | 3' | -54 | NC_001798.1 | + | 91348 | 0.7 | 0.810612 |
Target: 5'- --gGCUUCcccccggGGGAAGCcgGGCCgCCCg -3' miRNA: 3'- ccaUGGAGua-----CCCUUCGuaCUGG-GGG- -5' |
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5172 | 3' | -54 | NC_001798.1 | + | 80966 | 0.7 | 0.827917 |
Target: 5'- uGGU-CCUCGUGGacaucucCAUGACCCCg -3' miRNA: 3'- -CCAuGGAGUACCcuuc---GUACUGGGGg -5' |
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5172 | 3' | -54 | NC_001798.1 | + | 128738 | 0.7 | 0.84369 |
Target: 5'- uGUGCC-CA-GGGAcccucacGGCuaccUGGCCCCCg -3' miRNA: 3'- cCAUGGaGUaCCCU-------UCGu---ACUGGGGG- -5' |
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5172 | 3' | -54 | NC_001798.1 | + | 87381 | 0.7 | 0.844501 |
Target: 5'- -cUGCg-CGgagGGGggGCGUgcGACCCCCg -3' miRNA: 3'- ccAUGgaGUa--CCCuuCGUA--CUGGGGG- -5' |
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5172 | 3' | -54 | NC_001798.1 | + | 37288 | 0.7 | 0.852504 |
Target: 5'- gGGgcccACCcuggCGUGGGAGGC--GACCuCCCg -3' miRNA: 3'- -CCa---UGGa---GUACCCUUCGuaCUGG-GGG- -5' |
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5172 | 3' | -54 | NC_001798.1 | + | 57616 | 0.69 | 0.867897 |
Target: 5'- cGUGCgUCcggGGGAGGCAUuGGCCagcaCCa -3' miRNA: 3'- cCAUGgAGua-CCCUUCGUA-CUGGg---GG- -5' |
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5172 | 3' | -54 | NC_001798.1 | + | 86405 | 0.69 | 0.875274 |
Target: 5'- aGUGCCggUCGUGGaccagcucGAGGCG-GACCCCg -3' miRNA: 3'- cCAUGG--AGUACC--------CUUCGUaCUGGGGg -5' |
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5172 | 3' | -54 | NC_001798.1 | + | 91651 | 0.69 | 0.875274 |
Target: 5'- --gACgUCAaaGGggGCGUGGCCgCCCu -3' miRNA: 3'- ccaUGgAGUacCCuuCGUACUGG-GGG- -5' |
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5172 | 3' | -54 | NC_001798.1 | + | 135077 | 0.69 | 0.882431 |
Target: 5'- --cGCCUUucGGGAAGCGgucgcgcggUGGCaCCCCa -3' miRNA: 3'- ccaUGGAGuaCCCUUCGU---------ACUG-GGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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