miRNA display CGI


Results 21 - 40 of 46 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5172 3' -54 NC_001798.1 + 48773 0.68 0.908771
Target:  5'- aGU-CCUCG-GGGAcGCAcgGcACCCCCg -3'
miRNA:   3'- cCAuGGAGUaCCCUuCGUa-C-UGGGGG- -5'
5172 3' -54 NC_001798.1 + 85786 0.68 0.908771
Target:  5'- cGGgcCCUCAUcGGGAccC-UGGCCUCCg -3'
miRNA:   3'- -CCauGGAGUA-CCCUucGuACUGGGGG- -5'
5172 3' -54 NC_001798.1 + 113485 0.68 0.908771
Target:  5'- uGUGCgugaUCAUGGGcGGCGcGGCCCUg -3'
miRNA:   3'- cCAUGg---AGUACCCuUCGUaCUGGGGg -5'
5172 3' -54 NC_001798.1 + 43016 0.68 0.896067
Target:  5'- aGGccGCC-CggGGGGAGCGcggGGCCCCg -3'
miRNA:   3'- -CCa-UGGaGuaCCCUUCGUa--CUGGGGg -5'
5172 3' -54 NC_001798.1 + 87056 0.69 0.889364
Target:  5'- cGUGCC-CcUGGuGAAGac-GACCCCCg -3'
miRNA:   3'- cCAUGGaGuACC-CUUCguaCUGGGGG- -5'
5172 3' -54 NC_001798.1 + 110286 0.69 0.882431
Target:  5'- --gGCCUCGUGGGGGcCGUGuuucugcgcuacACCCCg -3'
miRNA:   3'- ccaUGGAGUACCCUUcGUAC------------UGGGGg -5'
5172 3' -54 NC_001798.1 + 135077 0.69 0.882431
Target:  5'- --cGCCUUucGGGAAGCGgucgcgcggUGGCaCCCCa -3'
miRNA:   3'- ccaUGGAGuaCCCUUCGU---------ACUG-GGGG- -5'
5172 3' -54 NC_001798.1 + 91651 0.69 0.875274
Target:  5'- --gACgUCAaaGGggGCGUGGCCgCCCu -3'
miRNA:   3'- ccaUGgAGUacCCuuCGUACUGG-GGG- -5'
5172 3' -54 NC_001798.1 + 86405 0.69 0.875274
Target:  5'- aGUGCCggUCGUGGaccagcucGAGGCG-GACCCCg -3'
miRNA:   3'- cCAUGG--AGUACC--------CUUCGUaCUGGGGg -5'
5172 3' -54 NC_001798.1 + 57616 0.69 0.867897
Target:  5'- cGUGCgUCcggGGGAGGCAUuGGCCagcaCCa -3'
miRNA:   3'- cCAUGgAGua-CCCUUCGUA-CUGGg---GG- -5'
5172 3' -54 NC_001798.1 + 37288 0.7 0.852504
Target:  5'- gGGgcccACCcuggCGUGGGAGGC--GACCuCCCg -3'
miRNA:   3'- -CCa---UGGa---GUACCCUUCGuaCUGG-GGG- -5'
5172 3' -54 NC_001798.1 + 87381 0.7 0.844501
Target:  5'- -cUGCg-CGgagGGGggGCGUgcGACCCCCg -3'
miRNA:   3'- ccAUGgaGUa--CCCuuCGUA--CUGGGGG- -5'
5172 3' -54 NC_001798.1 + 128738 0.7 0.84369
Target:  5'- uGUGCC-CA-GGGAcccucacGGCuaccUGGCCCCCg -3'
miRNA:   3'- cCAUGGaGUaCCCU-------UCGu---ACUGGGGG- -5'
5172 3' -54 NC_001798.1 + 80966 0.7 0.827917
Target:  5'- uGGU-CCUCGUGGacaucucCAUGACCCCg -3'
miRNA:   3'- -CCAuGGAGUACCcuuc---GUACUGGGGg -5'
5172 3' -54 NC_001798.1 + 91348 0.7 0.810612
Target:  5'- --gGCUUCcccccggGGGAAGCcgGGCCgCCCg -3'
miRNA:   3'- ccaUGGAGua-----CCCUUCGuaCUGG-GGG- -5'
5172 3' -54 NC_001798.1 + 80999 0.7 0.810612
Target:  5'- cGGU--CUUGUGGGAAGCcccgGAgCCCCCc -3'
miRNA:   3'- -CCAugGAGUACCCUUCGua--CU-GGGGG- -5'
5172 3' -54 NC_001798.1 + 70178 0.71 0.764635
Target:  5'- aGGU-CCUguUGGGGAGCcUGACCaaccuCCg -3'
miRNA:   3'- -CCAuGGAguACCCUUCGuACUGGg----GG- -5'
5172 3' -54 NC_001798.1 + 101826 0.72 0.735547
Target:  5'- gGGUAagCUCGcggcgggGGGAGGCGUGGgUCCCg -3'
miRNA:   3'- -CCAUg-GAGUa------CCCUUCGUACUgGGGG- -5'
5172 3' -54 NC_001798.1 + 103964 0.72 0.705639
Target:  5'- cGUGCCUgcUGGGcGAGCAgcccaGGCCCCUg -3'
miRNA:   3'- cCAUGGAguACCC-UUCGUa----CUGGGGG- -5'
5172 3' -54 NC_001798.1 + 2525 0.73 0.695532
Target:  5'- cGGcgGCgUCGgcggggcGGGggGCGcGGCCCCCg -3'
miRNA:   3'- -CCa-UGgAGUa------CCCuuCGUaCUGGGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.