miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5172 5' -60 NC_001798.1 + 15116 0.66 0.738703
Target:  5'- gUGGCGcugUCGUcGUCCUCGggggguucgccGUCCCCg -3'
miRNA:   3'- aACCGCa--AGCAcCGGGAGUa----------CGGGGG- -5'
5172 5' -60 NC_001798.1 + 128717 0.66 0.738703
Target:  5'- -gGGCGUcccuggacauccUCGUgugcccagGGaCCCUCAcggcuaccugGCCCCCg -3'
miRNA:   3'- aaCCGCA------------AGCA--------CC-GGGAGUa---------CGGGGG- -5'
5172 5' -60 NC_001798.1 + 16235 0.66 0.738703
Target:  5'- -gGGCGguggggcCGgGGCCCUCcccGCCCaCCu -3'
miRNA:   3'- aaCCGCaa-----GCaCCGGGAGua-CGGG-GG- -5'
5172 5' -60 NC_001798.1 + 24585 0.66 0.738703
Target:  5'- -aGGCGggccgCGUGGCCgUggaGUGCCUggCCg -3'
miRNA:   3'- aaCCGCaa---GCACCGGgAg--UACGGG--GG- -5'
5172 5' -60 NC_001798.1 + 4134 0.66 0.729081
Target:  5'- -gGGCGccgccccCGgGGCCCUCGcggGCaCCCCc -3'
miRNA:   3'- aaCCGCaa-----GCaCCGGGAGUa--CG-GGGG- -5'
5172 5' -60 NC_001798.1 + 113498 0.66 0.729081
Target:  5'- -gGGCGg-CGcGGCCCU-GUGCgCCCu -3'
miRNA:   3'- aaCCGCaaGCaCCGGGAgUACGgGGG- -5'
5172 5' -60 NC_001798.1 + 83112 0.66 0.728115
Target:  5'- uUUGGUGUuguuaaucgccgaUCGUugGGCCCUaCAcccCCCCCa -3'
miRNA:   3'- -AACCGCA-------------AGCA--CCGGGA-GUac-GGGGG- -5'
5172 5' -60 NC_001798.1 + 82195 0.66 0.71938
Target:  5'- -cGGCGgcaGUGccGCCUUCuccgggccuUGCCCCCc -3'
miRNA:   3'- aaCCGCaagCAC--CGGGAGu--------ACGGGGG- -5'
5172 5' -60 NC_001798.1 + 32436 0.66 0.71938
Target:  5'- -cGaGCG-UCGUGGCCCUgGcGCCUUa -3'
miRNA:   3'- aaC-CGCaAGCACCGGGAgUaCGGGGg -5'
5172 5' -60 NC_001798.1 + 134360 0.66 0.716455
Target:  5'- -gGGCG-UCGUGGggcccgccggccgcUCCUCGcGCCgCCCu -3'
miRNA:   3'- aaCCGCaAGCACC--------------GGGAGUaCGG-GGG- -5'
5172 5' -60 NC_001798.1 + 36928 0.66 0.699769
Target:  5'- aUGGCGUUgGgGGCUgggCAUGCCCa- -3'
miRNA:   3'- aACCGCAAgCaCCGGga-GUACGGGgg -5'
5172 5' -60 NC_001798.1 + 136021 0.66 0.696807
Target:  5'- -cGGCGUcccCGUggaucuguacccgcGGCCCUUgGUGCUCCCc -3'
miRNA:   3'- aaCCGCAa--GCA--------------CCGGGAG-UACGGGGG- -5'
5172 5' -60 NC_001798.1 + 153044 0.67 0.689877
Target:  5'- -cGGCGcgCGguUGGCCggCGccGCCCCCu -3'
miRNA:   3'- aaCCGCaaGC--ACCGGgaGUa-CGGGGG- -5'
5172 5' -60 NC_001798.1 + 147227 0.67 0.689877
Target:  5'- -cGGCGgagcgCGggGGCCC-CGggGCCCCg -3'
miRNA:   3'- aaCCGCaa---GCa-CCGGGaGUa-CGGGGg -5'
5172 5' -60 NC_001798.1 + 92975 0.67 0.689877
Target:  5'- gUGGaCGc-CGUGGCCCgcgCG-GCCgCCCa -3'
miRNA:   3'- aACC-GCaaGCACCGGGa--GUaCGG-GGG- -5'
5172 5' -60 NC_001798.1 + 35549 0.67 0.689877
Target:  5'- -gGGCGUUgccGGCCCggcCcgGCCCCg -3'
miRNA:   3'- aaCCGCAAgcaCCGGGa--GuaCGGGGg -5'
5172 5' -60 NC_001798.1 + 85174 0.67 0.679939
Target:  5'- cUGGCGgccugucaCGUGGUaggCGUGCCgCCCg -3'
miRNA:   3'- aACCGCaa------GCACCGggaGUACGG-GGG- -5'
5172 5' -60 NC_001798.1 + 32058 0.67 0.679939
Target:  5'- -cGGCGUcCGcgGGCgCCgc--GCCCCCg -3'
miRNA:   3'- aaCCGCAaGCa-CCG-GGaguaCGGGGG- -5'
5172 5' -60 NC_001798.1 + 81290 0.67 0.679939
Target:  5'- aUGGCGgaUCG-GGUCC-CGaggaccccgcUGCCCCCc -3'
miRNA:   3'- aACCGCa-AGCaCCGGGaGU----------ACGGGGG- -5'
5172 5' -60 NC_001798.1 + 128175 0.67 0.679939
Target:  5'- -cGGCGUcCGcuccccucUGGCCaUCggGCCCCUg -3'
miRNA:   3'- aaCCGCAaGC--------ACCGGgAGuaCGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.