miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5173 3' -55.6 NC_001798.1 + 104455 0.71 0.64244
Target:  5'- gGCGgucGCcCGCAGCAgCGUCUGGuCCu -3'
miRNA:   3'- aUGU---UGuGCGUCGUgGCAGACCuGGc -5'
5173 3' -55.6 NC_001798.1 + 103467 0.67 0.866619
Target:  5'- gGCAGgGcCGCAcGCACCGugUCUGGGuCCa -3'
miRNA:   3'- aUGUUgU-GCGU-CGUGGC--AGACCU-GGc -5'
5173 3' -55.6 NC_001798.1 + 100399 0.71 0.64244
Target:  5'- cGCGACGCGCucgagccguGCACCGU--GGGCCa -3'
miRNA:   3'- aUGUUGUGCGu--------CGUGGCAgaCCUGGc -5'
5173 3' -55.6 NC_001798.1 + 96935 0.66 0.901475
Target:  5'- cGCccGCGCGCgAGCGCUcuguGUgCUGGACCa -3'
miRNA:   3'- aUGu-UGUGCG-UCGUGG----CA-GACCUGGc -5'
5173 3' -55.6 NC_001798.1 + 94980 0.71 0.68349
Target:  5'- aGCGuGCAgGCGGCgGCCGcCUGGGCCc -3'
miRNA:   3'- aUGU-UGUgCGUCG-UGGCaGACCUGGc -5'
5173 3' -55.6 NC_001798.1 + 93440 0.7 0.733764
Target:  5'- gGCAcGCACGUGGCGgccaacCCGcagCUGGACCGc -3'
miRNA:   3'- aUGU-UGUGCGUCGU------GGCa--GACCUGGC- -5'
5173 3' -55.6 NC_001798.1 + 93268 0.71 0.663015
Target:  5'- cGCGGCccGCGcCGGCGCCGUCgGGGCg- -3'
miRNA:   3'- aUGUUG--UGC-GUCGUGGCAGaCCUGgc -5'
5173 3' -55.6 NC_001798.1 + 92107 0.7 0.743587
Target:  5'- gACGGCGgGCAGCAgCCGUC--GACCa -3'
miRNA:   3'- aUGUUGUgCGUCGU-GGCAGacCUGGc -5'
5173 3' -55.6 NC_001798.1 + 91798 0.66 0.925148
Target:  5'- gAUGACGCGCGGgG-CGUggGGACCGu -3'
miRNA:   3'- aUGUUGUGCGUCgUgGCAgaCCUGGC- -5'
5173 3' -55.6 NC_001798.1 + 91271 0.74 0.49985
Target:  5'- gGCAAgGCgGCGGUGCCGUCUGGGuggcuccCCGg -3'
miRNA:   3'- aUGUUgUG-CGUCGUGGCAGACCU-------GGC- -5'
5173 3' -55.6 NC_001798.1 + 91080 0.7 0.733764
Target:  5'- aGgGGCGCGCcggaGGCgGCCGUCgUGGACCc -3'
miRNA:   3'- aUgUUGUGCG----UCG-UGGCAG-ACCUGGc -5'
5173 3' -55.6 NC_001798.1 + 86437 0.68 0.843102
Target:  5'- -cCGAgGCGCAGC-CCGgggacggGGGCCGg -3'
miRNA:   3'- auGUUgUGCGUCGuGGCaga----CCUGGC- -5'
5173 3' -55.6 NC_001798.1 + 85347 0.66 0.906516
Target:  5'- cUugGACAcggggcccuucgcCGCGGCGuCCGUCgacaccuucgcgcUGGACCGc -3'
miRNA:   3'- -AugUUGU-------------GCGUCGU-GGCAG-------------ACCUGGC- -5'
5173 3' -55.6 NC_001798.1 + 84916 0.69 0.772428
Target:  5'- cGCGAgACGUAGCGCgCGUCUaGACUu -3'
miRNA:   3'- aUGUUgUGCGUCGUG-GCAGAcCUGGc -5'
5173 3' -55.6 NC_001798.1 + 80262 0.75 0.462668
Target:  5'- -uCGGCACGCGGCugGCCGaCUGGcGCCGg -3'
miRNA:   3'- auGUUGUGCGUCG--UGGCaGACC-UGGC- -5'
5173 3' -55.6 NC_001798.1 + 77692 0.68 0.816968
Target:  5'- -cCAGCGCGCccggggcAGCAgCGagcgCUGGGCCGc -3'
miRNA:   3'- auGUUGUGCG-------UCGUgGCa---GACCUGGC- -5'
5173 3' -55.6 NC_001798.1 + 76554 0.67 0.866619
Target:  5'- gACAGCgACGCGGCcuUCGUCccgGcGACCGg -3'
miRNA:   3'- aUGUUG-UGCGUCGu-GGCAGa--C-CUGGC- -5'
5173 3' -55.6 NC_001798.1 + 75282 0.66 0.901475
Target:  5'- cGCGGCGCGCGaUGCCGccCUGGcCCGc -3'
miRNA:   3'- aUGUUGUGCGUcGUGGCa-GACCuGGC- -5'
5173 3' -55.6 NC_001798.1 + 73318 0.69 0.760056
Target:  5'- cAgGACACGCAggcccgcGCGCCGUCgacgcgcccggcGGGCCGc -3'
miRNA:   3'- aUgUUGUGCGU-------CGUGGCAGa-----------CCUGGC- -5'
5173 3' -55.6 NC_001798.1 + 72808 0.69 0.762929
Target:  5'- gGCGcGCugGCGGCGCC-UCUcGGCCGg -3'
miRNA:   3'- aUGU-UGugCGUCGUGGcAGAcCUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.