miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5173 3' -55.6 NC_001798.1 + 23639 0.67 0.888214
Target:  5'- gGCGAC-CGCGG-GCCGcCUGGAgCGc -3'
miRNA:   3'- aUGUUGuGCGUCgUGGCaGACCUgGC- -5'
5173 3' -55.6 NC_001798.1 + 46231 0.67 0.888214
Target:  5'- gUAUGAC-CGUGGCGCCGUUggccgGGACgGu -3'
miRNA:   3'- -AUGUUGuGCGUCGUGGCAGa----CCUGgC- -5'
5173 3' -55.6 NC_001798.1 + 109774 0.67 0.887527
Target:  5'- gACGuCGCGCGGCgacccacGCCGaUCUccGGGCCGc -3'
miRNA:   3'- aUGUuGUGCGUCG-------UGGC-AGA--CCUGGC- -5'
5173 3' -55.6 NC_001798.1 + 6017 0.67 0.881239
Target:  5'- gGCAGCG-GCGGCAUCG-CgaaggGGGCCa -3'
miRNA:   3'- aUGUUGUgCGUCGUGGCaGa----CCUGGc -5'
5173 3' -55.6 NC_001798.1 + 1954 0.67 0.881239
Target:  5'- aGCAGCACGCccugcgcgcccAGCGCCGagacgUCggGGGCgCGg -3'
miRNA:   3'- aUGUUGUGCG-----------UCGUGGC-----AGa-CCUG-GC- -5'
5173 3' -55.6 NC_001798.1 + 108665 0.67 0.881239
Target:  5'- gACGGCcgACGCAacGCGCCGcCcccgGGGCCGc -3'
miRNA:   3'- aUGUUG--UGCGU--CGUGGCaGa---CCUGGC- -5'
5173 3' -55.6 NC_001798.1 + 46372 0.67 0.876945
Target:  5'- cGCc-CGCGUAgaccagcgaucccccGCGCCGUCUGG-CCGg -3'
miRNA:   3'- aUGuuGUGCGU---------------CGUGGCAGACCuGGC- -5'
5173 3' -55.6 NC_001798.1 + 70028 0.67 0.874039
Target:  5'- gGCGGCG-GCAGUcauucCCGUUUGGGCCc -3'
miRNA:   3'- aUGUUGUgCGUCGu----GGCAGACCUGGc -5'
5173 3' -55.6 NC_001798.1 + 1776 0.67 0.866619
Target:  5'- cACGGCGgGCAGCACC-UCgcaGGCCa -3'
miRNA:   3'- aUGUUGUgCGUCGUGGcAGac-CUGGc -5'
5173 3' -55.6 NC_001798.1 + 66804 0.67 0.866619
Target:  5'- gAC-GCGCGCGGguCCGUCgcGGAgcCCGg -3'
miRNA:   3'- aUGuUGUGCGUCguGGCAGa-CCU--GGC- -5'
5173 3' -55.6 NC_001798.1 + 103467 0.67 0.866619
Target:  5'- gGCAGgGcCGCAcGCACCGugUCUGGGuCCa -3'
miRNA:   3'- aUGUUgU-GCGU-CGUGGC--AGACCU-GGc -5'
5173 3' -55.6 NC_001798.1 + 56097 0.67 0.866619
Target:  5'- aGCc-CACGCGGCgugcGCCGUUcGGAUCGg -3'
miRNA:   3'- aUGuuGUGCGUCG----UGGCAGaCCUGGC- -5'
5173 3' -55.6 NC_001798.1 + 76554 0.67 0.866619
Target:  5'- gACAGCgACGCGGCcuUCGUCccgGcGACCGg -3'
miRNA:   3'- aUGUUG-UGCGUCGu-GGCAGa--C-CUGGC- -5'
5173 3' -55.6 NC_001798.1 + 51495 0.67 0.858986
Target:  5'- aGCuGCAgGCGGCAuuCCccCUGGACCGc -3'
miRNA:   3'- aUGuUGUgCGUCGU--GGcaGACCUGGC- -5'
5173 3' -55.6 NC_001798.1 + 154050 0.67 0.851145
Target:  5'- -cCGGgGCGCGGCACgG-CUGGagcGCCGg -3'
miRNA:   3'- auGUUgUGCGUCGUGgCaGACC---UGGC- -5'
5173 3' -55.6 NC_001798.1 + 37156 0.67 0.851145
Target:  5'- cGCu-CGCGCcGCGCCGcCUGGcggGCCGc -3'
miRNA:   3'- aUGuuGUGCGuCGUGGCaGACC---UGGC- -5'
5173 3' -55.6 NC_001798.1 + 149737 0.68 0.843102
Target:  5'- cGCGGCGCaGCAGCG-CGg--GGGCCGa -3'
miRNA:   3'- aUGUUGUG-CGUCGUgGCagaCCUGGC- -5'
5173 3' -55.6 NC_001798.1 + 86437 0.68 0.843102
Target:  5'- -cCGAgGCGCAGC-CCGgggacggGGGCCGg -3'
miRNA:   3'- auGUUgUGCGUCGuGGCaga----CCUGGC- -5'
5173 3' -55.6 NC_001798.1 + 12724 0.68 0.826441
Target:  5'- gGCGugGUGCGGCGCgaCGUCcUGGAUCGa -3'
miRNA:   3'- aUGUugUGCGUCGUG--GCAG-ACCUGGC- -5'
5173 3' -55.6 NC_001798.1 + 4070 0.68 0.826441
Target:  5'- gGCGGCcCGCGGuCGCCGcgggggUCcGGGCCGg -3'
miRNA:   3'- aUGUUGuGCGUC-GUGGC------AGaCCUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.