miRNA display CGI


Results 41 - 60 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5173 5' -64.7 NC_001798.1 + 91261 0.68 0.383596
Target:  5'- uUCuGCCGGcGGcaAGGCGGCGGUgccgucugGGUGg -3'
miRNA:   3'- uAGcCGGCC-CC--UCCGCCGCCA--------CCAUu -5'
5173 5' -64.7 NC_001798.1 + 146110 0.68 0.367934
Target:  5'- --aGGaaGGGGGggugguggcGGCGGCGGUGGa-- -3'
miRNA:   3'- uagCCggCCCCU---------CCGCCGCCACCauu -5'
5173 5' -64.7 NC_001798.1 + 23535 0.67 0.449605
Target:  5'- cUCGGCgCGGacgacgaGGAGGCGGgGGUGc--- -3'
miRNA:   3'- uAGCCG-GCC-------CCUCCGCCgCCACcauu -5'
5173 5' -64.7 NC_001798.1 + 24518 0.67 0.410387
Target:  5'- -cCGGCCGGGGccgacgacgacgacgAcgacgacGGCgccGGCGGUGGUGg -3'
miRNA:   3'- uaGCCGGCCCC---------------U-------CCG---CCGCCACCAUu -5'
5173 5' -64.7 NC_001798.1 + 115752 0.67 0.449605
Target:  5'- -cCGGCCGGuccGGGGGCauccaggccaccuGGCGcGUGGUc- -3'
miRNA:   3'- uaGCCGGCC---CCUCCG-------------CCGC-CACCAuu -5'
5173 5' -64.7 NC_001798.1 + 85280 0.67 0.424634
Target:  5'- --aGGCuuCGGGGGGGCGGgGGccggGGUc- -3'
miRNA:   3'- uagCCG--GCCCCUCCGCCgCCa---CCAuu -5'
5173 5' -64.7 NC_001798.1 + 36414 0.67 0.441768
Target:  5'- -cCuGCCGGGcGGGGCGGUGG-GGc-- -3'
miRNA:   3'- uaGcCGGCCC-CUCCGCCGCCaCCauu -5'
5173 5' -64.7 NC_001798.1 + 97469 0.67 0.424634
Target:  5'- -gCGGCUGGGGGccGGCGGCGcGaccgGGg-- -3'
miRNA:   3'- uaGCCGGCCCCU--CCGCCGC-Ca---CCauu -5'
5173 5' -64.7 NC_001798.1 + 12694 0.67 0.424634
Target:  5'- gAUCaGGcCCGGguugcuGGGGGCGGCGGgggcgUGGUGc -3'
miRNA:   3'- -UAG-CC-GGCC------CCUCCGCCGCC-----ACCAUu -5'
5173 5' -64.7 NC_001798.1 + 12342 0.67 0.424634
Target:  5'- gAUCGGaCGGGucGAGGUGGCuGUGGg-- -3'
miRNA:   3'- -UAGCCgGCCC--CUCCGCCGcCACCauu -5'
5173 5' -64.7 NC_001798.1 + 36079 0.67 0.450481
Target:  5'- --gGGCgCGGGGuAGGUgggugGGCGgGUGGUGGg -3'
miRNA:   3'- uagCCG-GCCCC-UCCG-----CCGC-CACCAUU- -5'
5173 5' -64.7 NC_001798.1 + 64723 0.67 0.407903
Target:  5'- cUgGGCCG---AGGCGGCGGUGGg-- -3'
miRNA:   3'- uAgCCGGCcccUCCGCCGCCACCauu -5'
5173 5' -64.7 NC_001798.1 + 36832 0.67 0.407903
Target:  5'- gGUCGGCgUGGGGAccGGCuGuGUGGUGGg-- -3'
miRNA:   3'- -UAGCCG-GCCCCU--CCG-C-CGCCACCauu -5'
5173 5' -64.7 NC_001798.1 + 16218 0.66 0.486237
Target:  5'- -aCGcGCCgccuguGGGGGGGCGGUGGggccgGGg-- -3'
miRNA:   3'- uaGC-CGG------CCCCUCCGCCGCCa----CCauu -5'
5173 5' -64.7 NC_001798.1 + 90424 0.66 0.486237
Target:  5'- -gCGGCCGGGcuuGAGGCGGUaccagccgaaGGUGa--- -3'
miRNA:   3'- uaGCCGGCCC---CUCCGCCG----------CCACcauu -5'
5173 5' -64.7 NC_001798.1 + 26966 0.66 0.486237
Target:  5'- -gCGGgCGGGGgucGGGCgGGCGGgGGUc- -3'
miRNA:   3'- uaGCCgGCCCC---UCCG-CCGCCaCCAuu -5'
5173 5' -64.7 NC_001798.1 + 26877 0.66 0.486237
Target:  5'- -gCGGgCGGGGgucGGGCgGGCGGgGGUc- -3'
miRNA:   3'- uaGCCgGCCCC---UCCG-CCGCCaCCAuu -5'
5173 5' -64.7 NC_001798.1 + 26847 0.66 0.486237
Target:  5'- -gCGGgCGGGGgucGGGCgGGCGGgGGUc- -3'
miRNA:   3'- uaGCCgGCCCC---UCCG-CCGCCaCCAuu -5'
5173 5' -64.7 NC_001798.1 + 26817 0.66 0.486237
Target:  5'- -gCGGgCGGGGgucGGGCgGGCGGgGGUc- -3'
miRNA:   3'- uaGCCgGCCCC---UCCG-CCGCCaCCAuu -5'
5173 5' -64.7 NC_001798.1 + 57517 0.66 0.459287
Target:  5'- --gGGuuGGGGGGGCGuGgGuGUGGUu- -3'
miRNA:   3'- uagCCggCCCCUCCGC-CgC-CACCAuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.