Results 61 - 76 of 76 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5173 | 5' | -64.7 | NC_001798.1 | + | 101836 | 0.68 | 0.374927 |
Target: 5'- -gCGGCgGGGGGaggcgugggucccGGCGGCGGcGGa-- -3' miRNA: 3'- uaGCCGgCCCCU-------------CCGCCGCCaCCauu -5' |
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5173 | 5' | -64.7 | NC_001798.1 | + | 102037 | 0.71 | 0.238329 |
Target: 5'- gGUUGGgCGGGGGucuccgugucugcguGGgGGUGGUGGUAGg -3' miRNA: 3'- -UAGCCgGCCCCU---------------CCgCCGCCACCAUU- -5' |
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5173 | 5' | -64.7 | NC_001798.1 | + | 106977 | 1.03 | 0.001117 |
Target: 5'- uAUCGGCCGGGGAGGCGGCGGUGGUAAu -3' miRNA: 3'- -UAGCCGGCCCCUCCGCCGCCACCAUU- -5' |
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5173 | 5' | -64.7 | NC_001798.1 | + | 110319 | 0.7 | 0.264872 |
Target: 5'- -cCGGCCGGGGAGGUcaugucGGUgcugcuGGUGGa-- -3' miRNA: 3'- uaGCCGGCCCCUCCG------CCG------CCACCauu -5' |
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5173 | 5' | -64.7 | NC_001798.1 | + | 113637 | 0.68 | 0.37571 |
Target: 5'- -gCGGCCGGcgccgccaugugGGuGGCGGCGGcGGa-- -3' miRNA: 3'- uaGCCGGCC------------CCuCCGCCGCCaCCauu -5' |
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5173 | 5' | -64.7 | NC_001798.1 | + | 115752 | 0.67 | 0.449605 |
Target: 5'- -cCGGCCGGuccGGGGGCauccaggccaccuGGCGcGUGGUc- -3' miRNA: 3'- uaGCCGGCC---CCUCCG-------------CCGC-CACCAuu -5' |
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5173 | 5' | -64.7 | NC_001798.1 | + | 122831 | 0.74 | 0.146278 |
Target: 5'- -gCGGUCGGGGGcGGCGGCGGcGGc-- -3' miRNA: 3'- uaGCCGGCCCCU-CCGCCGCCaCCauu -5' |
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5173 | 5' | -64.7 | NC_001798.1 | + | 128238 | 0.66 | 0.477168 |
Target: 5'- cGUCGuGUCGcuGGAGGCGGCcGGcaUGGUGGa -3' miRNA: 3'- -UAGC-CGGCc-CCUCCGCCG-CC--ACCAUU- -5' |
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5173 | 5' | -64.7 | NC_001798.1 | + | 145832 | 0.7 | 0.264872 |
Target: 5'- -gCGGUCGGGGugGGaGUGGUGGUGGg-- -3' miRNA: 3'- uaGCCGGCCCC--UC-CGCCGCCACCauu -5' |
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5173 | 5' | -64.7 | NC_001798.1 | + | 146033 | 0.66 | 0.459287 |
Target: 5'- --aGGCgCGguGGGGGGC-GUGGUGGUGAa -3' miRNA: 3'- uagCCG-GC--CCCUCCGcCGCCACCAUU- -5' |
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5173 | 5' | -64.7 | NC_001798.1 | + | 146110 | 0.68 | 0.367934 |
Target: 5'- --aGGaaGGGGGggugguggcGGCGGCGGUGGa-- -3' miRNA: 3'- uagCCggCCCCU---------CCGCCGCCACCauu -5' |
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5173 | 5' | -64.7 | NC_001798.1 | + | 148039 | 0.76 | 0.119979 |
Target: 5'- cGUgGGCgCGGGcGGGGgGGUGGUGGUAGu -3' miRNA: 3'- -UAgCCG-GCCC-CUCCgCCGCCACCAUU- -5' |
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5173 | 5' | -64.7 | NC_001798.1 | + | 148409 | 0.7 | 0.289858 |
Target: 5'- -gCGGgCGGGGugggcgccgGGGCGGgGGUGGg-- -3' miRNA: 3'- uaGCCgGCCCC---------UCCGCCgCCACCauu -5' |
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5173 | 5' | -64.7 | NC_001798.1 | + | 151608 | 0.68 | 0.383596 |
Target: 5'- cUCGGCCGGGGgccGGGCcGGgGGcgUGGc-- -3' miRNA: 3'- uAGCCGGCCCC---UCCG-CCgCC--ACCauu -5' |
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5173 | 5' | -64.7 | NC_001798.1 | + | 153805 | 0.69 | 0.337951 |
Target: 5'- -gCGGCgGGGGgcAGGCGGCGGcaGGc-- -3' miRNA: 3'- uaGCCGgCCCC--UCCGCCGCCa-CCauu -5' |
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5173 | 5' | -64.7 | NC_001798.1 | + | 154111 | 0.69 | 0.330738 |
Target: 5'- --gGcGCCGGGGAccccGGCGGCGG-GGa-- -3' miRNA: 3'- uagC-CGGCCCCU----CCGCCGCCaCCauu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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