miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5173 5' -64.7 NC_001798.1 + 88032 0.66 0.499068
Target:  5'- cUUGGCCGGGGAgggcagggccgcuggGGgGGCGGgcucguccccUGGg-- -3'
miRNA:   3'- uAGCCGGCCCCU---------------CCgCCGCC----------ACCauu -5'
5173 5' -64.7 NC_001798.1 + 86263 0.68 0.37571
Target:  5'- -aCGGCCGGGGgcgcGGGCgcaccGGCGG-GGa-- -3'
miRNA:   3'- uaGCCGGCCCC----UCCG-----CCGCCaCCauu -5'
5173 5' -64.7 NC_001798.1 + 85280 0.67 0.424634
Target:  5'- --aGGCuuCGGGGGGGCGGgGGccggGGUc- -3'
miRNA:   3'- uagCCG--GCCCCUCCGCCgCCa---CCAuu -5'
5173 5' -64.7 NC_001798.1 + 73649 0.66 0.495386
Target:  5'- -aUGGgCGGGGGGGUucgGGCGGcGGa-- -3'
miRNA:   3'- uaGCCgGCCCCUCCG---CCGCCaCCauu -5'
5173 5' -64.7 NC_001798.1 + 71383 0.72 0.225384
Target:  5'- uAUCGGCCcuggaGGGGuuuuuGGUGGCGGgGGUGc -3'
miRNA:   3'- -UAGCCGG-----CCCCu----CCGCCGCCaCCAUu -5'
5173 5' -64.7 NC_001798.1 + 70320 0.66 0.477168
Target:  5'- gGUCGGcCCGGcGGAGGC-GCGG-GcGUGc -3'
miRNA:   3'- -UAGCC-GGCC-CCUCCGcCGCCaC-CAUu -5'
5173 5' -64.7 NC_001798.1 + 69190 0.7 0.283442
Target:  5'- --aGGUgGGGGAGGuCGGUGG-GGUGc -3'
miRNA:   3'- uagCCGgCCCCUCC-GCCGCCaCCAUu -5'
5173 5' -64.7 NC_001798.1 + 67705 0.7 0.289858
Target:  5'- --gGGcCCGuGGGAGGCGG-GGUGGg-- -3'
miRNA:   3'- uagCC-GGC-CCCUCCGCCgCCACCauu -5'
5173 5' -64.7 NC_001798.1 + 64723 0.67 0.407903
Target:  5'- cUgGGCCG---AGGCGGCGGUGGg-- -3'
miRNA:   3'- uAgCCGGCcccUCCGCCGCCACCauu -5'
5173 5' -64.7 NC_001798.1 + 59675 0.66 0.459287
Target:  5'- cUCGGCuCGcGuGGGGGCGGCGGg----- -3'
miRNA:   3'- uAGCCG-GC-C-CCUCCGCCGCCaccauu -5'
5173 5' -64.7 NC_001798.1 + 57517 0.66 0.459287
Target:  5'- --gGGuuGGGGGGGCGuGgGuGUGGUu- -3'
miRNA:   3'- uagCCggCCCCUCCGC-CgC-CACCAuu -5'
5173 5' -64.7 NC_001798.1 + 56413 0.66 0.486237
Target:  5'- -gCGGCgGGGGcuGGUGGCugccGUGGUGc -3'
miRNA:   3'- uaGCCGgCCCCu-CCGCCGc---CACCAUu -5'
5173 5' -64.7 NC_001798.1 + 56181 0.7 0.289858
Target:  5'- -aCGG-CGGGGGGGUGG-GGUGGg-- -3'
miRNA:   3'- uaGCCgGCCCCUCCGCCgCCACCauu -5'
5173 5' -64.7 NC_001798.1 + 55978 0.73 0.186487
Target:  5'- -cCGcGCCGGGGAGGCcGCGGgggcgaggggcUGGUAGg -3'
miRNA:   3'- uaGC-CGGCCCCUCCGcCGCC-----------ACCAUU- -5'
5173 5' -64.7 NC_001798.1 + 45914 0.66 0.486237
Target:  5'- aAUCGGCgGGucucgGGGGGUGGCGGUc---- -3'
miRNA:   3'- -UAGCCGgCC-----CCUCCGCCGCCAccauu -5'
5173 5' -64.7 NC_001798.1 + 44996 0.7 0.289858
Target:  5'- -gCGGCUGcaGGAGGCccuGGCGGUGGUc- -3'
miRNA:   3'- uaGCCGGCc-CCUCCG---CCGCCACCAuu -5'
5173 5' -64.7 NC_001798.1 + 36832 0.67 0.407903
Target:  5'- gGUCGGCgUGGGGAccGGCuGuGUGGUGGg-- -3'
miRNA:   3'- -UAGCCG-GCCCCU--CCG-C-CGCCACCauu -5'
5173 5' -64.7 NC_001798.1 + 36593 0.69 0.32364
Target:  5'- -gCGGCCGGgcGGGGGCGcGCGGcGGc-- -3'
miRNA:   3'- uaGCCGGCC--CCUCCGC-CGCCaCCauu -5'
5173 5' -64.7 NC_001798.1 + 36551 0.69 0.32364
Target:  5'- -gCGGCCGGgcGGGGGCGcGCGGcGGc-- -3'
miRNA:   3'- uaGCCGGCC--CCUCCGC-CGCCaCCauu -5'
5173 5' -64.7 NC_001798.1 + 36509 0.69 0.32364
Target:  5'- -gCGGCCGGgcGGGGGCGcGCGGcGGc-- -3'
miRNA:   3'- uaGCCGGCC--CCUCCGC-CGCCaCCauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.