miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5173 5' -64.7 NC_001798.1 + 59675 0.66 0.459287
Target:  5'- cUCGGCuCGcGuGGGGGCGGCGGg----- -3'
miRNA:   3'- uAGCCG-GC-C-CCUCCGCCGCCaccauu -5'
5173 5' -64.7 NC_001798.1 + 146033 0.66 0.459287
Target:  5'- --aGGCgCGguGGGGGGC-GUGGUGGUGAa -3'
miRNA:   3'- uagCCG-GC--CCCUCCGcCGCCACCAUU- -5'
5173 5' -64.7 NC_001798.1 + 31145 0.66 0.459287
Target:  5'- -cCGGCgCGGG--GGCGGCGGUGcGg-- -3'
miRNA:   3'- uaGCCG-GCCCcuCCGCCGCCAC-Cauu -5'
5173 5' -64.7 NC_001798.1 + 36079 0.67 0.450481
Target:  5'- --gGGCgCGGGGuAGGUgggugGGCGgGUGGUGGg -3'
miRNA:   3'- uagCCG-GCCCC-UCCG-----CCGC-CACCAUU- -5'
5173 5' -64.7 NC_001798.1 + 115752 0.67 0.449605
Target:  5'- -cCGGCCGGuccGGGGGCauccaggccaccuGGCGcGUGGUc- -3'
miRNA:   3'- uaGCCGGCC---CCUCCG-------------CCGC-CACCAuu -5'
5173 5' -64.7 NC_001798.1 + 23535 0.67 0.449605
Target:  5'- cUCGGCgCGGacgacgaGGAGGCGGgGGUGc--- -3'
miRNA:   3'- uAGCCG-GCC-------CCUCCGCCgCCACcauu -5'
5173 5' -64.7 NC_001798.1 + 36414 0.67 0.441768
Target:  5'- -cCuGCCGGGcGGGGCGGUGG-GGc-- -3'
miRNA:   3'- uaGcCGGCCC-CUCCGCCGCCaCCauu -5'
5173 5' -64.7 NC_001798.1 + 97469 0.67 0.424634
Target:  5'- -gCGGCUGGGGGccGGCGGCGcGaccgGGg-- -3'
miRNA:   3'- uaGCCGGCCCCU--CCGCCGC-Ca---CCauu -5'
5173 5' -64.7 NC_001798.1 + 12694 0.67 0.424634
Target:  5'- gAUCaGGcCCGGguugcuGGGGGCGGCGGgggcgUGGUGc -3'
miRNA:   3'- -UAG-CC-GGCC------CCUCCGCCGCC-----ACCAUu -5'
5173 5' -64.7 NC_001798.1 + 12342 0.67 0.424634
Target:  5'- gAUCGGaCGGGucGAGGUGGCuGUGGg-- -3'
miRNA:   3'- -UAGCCgGCCC--CUCCGCCGcCACCauu -5'
5173 5' -64.7 NC_001798.1 + 85280 0.67 0.424634
Target:  5'- --aGGCuuCGGGGGGGCGGgGGccggGGUc- -3'
miRNA:   3'- uagCCG--GCCCCUCCGCCgCCa---CCAuu -5'
5173 5' -64.7 NC_001798.1 + 24518 0.67 0.410387
Target:  5'- -cCGGCCGGGGccgacgacgacgacgAcgacgacGGCgccGGCGGUGGUGg -3'
miRNA:   3'- uaGCCGGCCCC---------------U-------CCG---CCGCCACCAUu -5'
5173 5' -64.7 NC_001798.1 + 36832 0.67 0.407903
Target:  5'- gGUCGGCgUGGGGAccGGCuGuGUGGUGGg-- -3'
miRNA:   3'- -UAGCCG-GCCCCU--CCG-C-CGCCACCauu -5'
5173 5' -64.7 NC_001798.1 + 64723 0.67 0.407903
Target:  5'- cUgGGCCG---AGGCGGCGGUGGg-- -3'
miRNA:   3'- uAgCCGGCcccUCCGCCGCCACCauu -5'
5173 5' -64.7 NC_001798.1 + 19766 0.68 0.391591
Target:  5'- -gUGGCCgcagggauaGGGGcAGGCGGCGG-GGa-- -3'
miRNA:   3'- uaGCCGG---------CCCC-UCCGCCGCCaCCauu -5'
5173 5' -64.7 NC_001798.1 + 26931 0.68 0.391591
Target:  5'- gGUCGGgCGGGcGGGGUcgGGCGGgcgGGg-- -3'
miRNA:   3'- -UAGCCgGCCC-CUCCG--CCGCCa--CCauu -5'
5173 5' -64.7 NC_001798.1 + 151608 0.68 0.383596
Target:  5'- cUCGGCCGGGGgccGGGCcGGgGGcgUGGc-- -3'
miRNA:   3'- uAGCCGGCCCC---UCCG-CCgCC--ACCauu -5'
5173 5' -64.7 NC_001798.1 + 91261 0.68 0.383596
Target:  5'- uUCuGCCGGcGGcaAGGCGGCGGUgccgucugGGUGg -3'
miRNA:   3'- uAGcCGGCC-CC--UCCGCCGCCA--------CCAUu -5'
5173 5' -64.7 NC_001798.1 + 113637 0.68 0.37571
Target:  5'- -gCGGCCGGcgccgccaugugGGuGGCGGCGGcGGa-- -3'
miRNA:   3'- uaGCCGGCC------------CCuCCGCCGCCaCCauu -5'
5173 5' -64.7 NC_001798.1 + 86263 0.68 0.37571
Target:  5'- -aCGGCCGGGGgcgcGGGCgcaccGGCGG-GGa-- -3'
miRNA:   3'- uaGCCGGCCCC----UCCG-----CCGCCaCCauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.