miRNA display CGI


Results 1 - 20 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5174 3' -55.1 NC_001798.1 + 150463 0.66 0.926327
Target:  5'- -aCGGcCGCGCGGGGgcGCGCgGCGc- -3'
miRNA:   3'- ugGCC-GUGCGUUUUuuCGCGgCGCua -5'
5174 3' -55.1 NC_001798.1 + 1364 0.66 0.926327
Target:  5'- gGCCGcCGCGCAc---GGCGUCGCGc- -3'
miRNA:   3'- -UGGCcGUGCGUuuuuUCGCGGCGCua -5'
5174 3' -55.1 NC_001798.1 + 43777 0.66 0.926327
Target:  5'- gUCGGaCACGCGc--AGGCaGCUGCGAUc -3'
miRNA:   3'- uGGCC-GUGCGUuuuUUCG-CGGCGCUA- -5'
5174 3' -55.1 NC_001798.1 + 26495 0.66 0.926327
Target:  5'- cGCgGGcCGCGCGGGGAcgguGCugGCCGCGGc -3'
miRNA:   3'- -UGgCC-GUGCGUUUUUu---CG--CGGCGCUa -5'
5174 3' -55.1 NC_001798.1 + 83766 0.66 0.926327
Target:  5'- cGCCGcCA-GCAAcAGAAGCGCCGgGGg -3'
miRNA:   3'- -UGGCcGUgCGUU-UUUUCGCGGCgCUa -5'
5174 3' -55.1 NC_001798.1 + 84206 0.66 0.926327
Target:  5'- cGCCGugauCGCGCcccccGGGGCGCCGUGGg -3'
miRNA:   3'- -UGGCc---GUGCGuuu--UUUCGCGGCGCUa -5'
5174 3' -55.1 NC_001798.1 + 91568 0.66 0.926327
Target:  5'- -gUGGUgucCGCG--GGGGCGCCGCGGUu -3'
miRNA:   3'- ugGCCGu--GCGUuuUUUCGCGGCGCUA- -5'
5174 3' -55.1 NC_001798.1 + 141588 0.66 0.920754
Target:  5'- -gCGGCACGCGAcgGccGGCGUgGcCGAg -3'
miRNA:   3'- ugGCCGUGCGUUuuU--UCGCGgC-GCUa -5'
5174 3' -55.1 NC_001798.1 + 6024 0.66 0.920754
Target:  5'- -gCGGCAuCGCGAAGGGG-GCCacaGCGAg -3'
miRNA:   3'- ugGCCGU-GCGUUUUUUCgCGG---CGCUa -5'
5174 3' -55.1 NC_001798.1 + 23501 0.66 0.920754
Target:  5'- cGCCaGCGcCGCAGAcca-CGCCGCGGg -3'
miRNA:   3'- -UGGcCGU-GCGUUUuuucGCGGCGCUa -5'
5174 3' -55.1 NC_001798.1 + 35433 0.66 0.920754
Target:  5'- -gCGGCgggagGCGUggGccgcuGGCGCCGCGGc -3'
miRNA:   3'- ugGCCG-----UGCGuuUuu---UCGCGGCGCUa -5'
5174 3' -55.1 NC_001798.1 + 100186 0.66 0.920754
Target:  5'- gGCCGGCGgGU----GAGCGCgCGCa-- -3'
miRNA:   3'- -UGGCCGUgCGuuuuUUCGCG-GCGcua -5'
5174 3' -55.1 NC_001798.1 + 117546 0.66 0.920754
Target:  5'- cCCGGUcuuuggcuGCGCcc--AGGUGCCGCGGc -3'
miRNA:   3'- uGGCCG--------UGCGuuuuUUCGCGGCGCUa -5'
5174 3' -55.1 NC_001798.1 + 120320 0.66 0.920754
Target:  5'- gACCGcCACGCGAA----CGCUGCGAa -3'
miRNA:   3'- -UGGCcGUGCGUUUuuucGCGGCGCUa -5'
5174 3' -55.1 NC_001798.1 + 125482 0.66 0.920754
Target:  5'- uCUGGUgGCGCuu--GGGCGUCGCGGUg -3'
miRNA:   3'- uGGCCG-UGCGuuuuUUCGCGGCGCUA- -5'
5174 3' -55.1 NC_001798.1 + 139033 0.66 0.920754
Target:  5'- uCCGGUACcuGCGAAccAGcCGCUGCGGc -3'
miRNA:   3'- uGGCCGUG--CGUUUuuUC-GCGGCGCUa -5'
5174 3' -55.1 NC_001798.1 + 146501 0.66 0.920754
Target:  5'- gGCCGGCaACGCcccgc-GCcgGCCGCGGc -3'
miRNA:   3'- -UGGCCG-UGCGuuuuuuCG--CGGCGCUa -5'
5174 3' -55.1 NC_001798.1 + 150797 0.66 0.920754
Target:  5'- cCCcGCcCGCAAcgGGGCGCCGCc-- -3'
miRNA:   3'- uGGcCGuGCGUUuuUUCGCGGCGcua -5'
5174 3' -55.1 NC_001798.1 + 25427 0.66 0.914932
Target:  5'- cGCUGGcCGCGCGcu---GCGCCGCc-- -3'
miRNA:   3'- -UGGCC-GUGCGUuuuuuCGCGGCGcua -5'
5174 3' -55.1 NC_001798.1 + 39626 0.66 0.914932
Target:  5'- cGCCGGCGggguuuuggUGUGGAGucGGCGCCGcCGGg -3'
miRNA:   3'- -UGGCCGU---------GCGUUUUu-UCGCGGC-GCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.