miRNA display CGI


Results 21 - 40 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5174 3' -55.1 NC_001798.1 + 25427 0.66 0.914932
Target:  5'- cGCUGGcCGCGCGcu---GCGCCGCc-- -3'
miRNA:   3'- -UGGCC-GUGCGUuuuuuCGCGGCGcua -5'
5174 3' -55.1 NC_001798.1 + 133747 0.66 0.914932
Target:  5'- aGCUGcGCGCGCccgcguGGGGGCGCUGCu-- -3'
miRNA:   3'- -UGGC-CGUGCGuu----UUUUCGCGGCGcua -5'
5174 3' -55.1 NC_001798.1 + 51942 0.66 0.908864
Target:  5'- cGCCGuGCcgcugcucaGCGCGGGAGGG-GCCGCGc- -3'
miRNA:   3'- -UGGC-CG---------UGCGUUUUUUCgCGGCGCua -5'
5174 3' -55.1 NC_001798.1 + 150835 0.66 0.908864
Target:  5'- -gCGGgGCGCcAGGGGGCGCCGguCGGg -3'
miRNA:   3'- ugGCCgUGCGuUUUUUCGCGGC--GCUa -5'
5174 3' -55.1 NC_001798.1 + 65745 0.66 0.908864
Target:  5'- gGCCGGCAUGaugcuGGcGGUGCCGgGGc -3'
miRNA:   3'- -UGGCCGUGCguu--UUuUCGCGGCgCUa -5'
5174 3' -55.1 NC_001798.1 + 76234 0.66 0.908244
Target:  5'- uACCGGCcuuugaccaacacACGCGGGAcgucgcucAGcGCGCCGCGc- -3'
miRNA:   3'- -UGGCCG-------------UGCGUUUU--------UU-CGCGGCGCua -5'
5174 3' -55.1 NC_001798.1 + 104081 0.66 0.902551
Target:  5'- aGCgCGGUgagGCGCAc--GAGCGCCGCc-- -3'
miRNA:   3'- -UG-GCCG---UGCGUuuuUUCGCGGCGcua -5'
5174 3' -55.1 NC_001798.1 + 79373 0.66 0.902551
Target:  5'- gGCCGGCgGC-CAGAcgGGCGCgggCGCGGa -3'
miRNA:   3'- -UGGCCG-UGcGUUUuuUCGCG---GCGCUa -5'
5174 3' -55.1 NC_001798.1 + 34099 0.66 0.902551
Target:  5'- gACCGGCGCGUggGGgcgguGGGCGuacgggcccgacCCGCGc- -3'
miRNA:   3'- -UGGCCGUGCGuuUU-----UUCGC------------GGCGCua -5'
5174 3' -55.1 NC_001798.1 + 656 0.66 0.902551
Target:  5'- cCCGcGgGCGCGGGAGAcGUGCCGCc-- -3'
miRNA:   3'- uGGC-CgUGCGUUUUUU-CGCGGCGcua -5'
5174 3' -55.1 NC_001798.1 + 149260 0.66 0.898647
Target:  5'- gGCCGGCGCGggcgcgcccugcuccCGAGAccacGGGUGgCGCGAc -3'
miRNA:   3'- -UGGCCGUGC---------------GUUUU----UUCGCgGCGCUa -5'
5174 3' -55.1 NC_001798.1 + 141126 0.66 0.895996
Target:  5'- cGCCGGCGCaucgGCAAcc-AGgGCCGcCGAc -3'
miRNA:   3'- -UGGCCGUG----CGUUuuuUCgCGGC-GCUa -5'
5174 3' -55.1 NC_001798.1 + 117077 0.66 0.895996
Target:  5'- uGCa-GCACGCccgcGAGAGCGCgGCGGg -3'
miRNA:   3'- -UGgcCGUGCGuu--UUUUCGCGgCGCUa -5'
5174 3' -55.1 NC_001798.1 + 31144 0.66 0.895996
Target:  5'- cCCGGCGCGgGGgcggcggugcGGGGGCGacCCGCGGa -3'
miRNA:   3'- uGGCCGUGCgUU----------UUUUCGC--GGCGCUa -5'
5174 3' -55.1 NC_001798.1 + 93437 0.66 0.895996
Target:  5'- cCCGGCACGCAcgu-GGCGgccaacCCGCa-- -3'
miRNA:   3'- uGGCCGUGCGUuuuuUCGC------GGCGcua -5'
5174 3' -55.1 NC_001798.1 + 152999 0.66 0.895996
Target:  5'- aGCCGGCGCGgGGc--GGuCGCCGgGGc -3'
miRNA:   3'- -UGGCCGUGCgUUuuuUC-GCGGCgCUa -5'
5174 3' -55.1 NC_001798.1 + 2210 0.66 0.895996
Target:  5'- cGCgCGGCGCaGCGGGcccGAGGCGCgcaGCGGg -3'
miRNA:   3'- -UG-GCCGUG-CGUUU---UUUCGCGg--CGCUa -5'
5174 3' -55.1 NC_001798.1 + 4055 0.66 0.895996
Target:  5'- cCCGGCgGCGCucc-AGGCGgcCCGCGGUc -3'
miRNA:   3'- uGGCCG-UGCGuuuuUUCGC--GGCGCUA- -5'
5174 3' -55.1 NC_001798.1 + 93588 0.66 0.894656
Target:  5'- uGCUGGCcaagAUGCuguuuuaccuGGAGCGCUGCGAc -3'
miRNA:   3'- -UGGCCG----UGCGuuu-------UUUCGCGGCGCUa -5'
5174 3' -55.1 NC_001798.1 + 98264 0.67 0.889201
Target:  5'- uACCGGUGCGgGGAGcuugaguuGCGCCGCc-- -3'
miRNA:   3'- -UGGCCGUGCgUUUUuu------CGCGGCGcua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.