miRNA display CGI


Results 1 - 20 of 379 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5174 5' -62.9 NC_001798.1 + 134157 0.66 0.641986
Target:  5'- -gGCCCCCggggccgucgcggccGCCCg-CGCcGCGACgGCCc -3'
miRNA:   3'- ugUGGGGG---------------UGGGagGCGuCGCUG-CGG- -5'
5174 5' -62.9 NC_001798.1 + 107009 0.66 0.639068
Target:  5'- aGCGCCCagauaacaaugagcaCGCCUUauGCGGCGAcggaCGCCg -3'
miRNA:   3'- -UGUGGGg--------------GUGGGAggCGUCGCU----GCGG- -5'
5174 5' -62.9 NC_001798.1 + 1185 0.66 0.638096
Target:  5'- cACGCCgCCGCCCgCCGCGGCc----- -3'
miRNA:   3'- -UGUGGgGGUGGGaGGCGUCGcugcgg -5'
5174 5' -62.9 NC_001798.1 + 34850 0.66 0.638096
Target:  5'- -gACCgCCgggcgggggacGCCUUCCGCc-CGGCGCCg -3'
miRNA:   3'- ugUGGgGG-----------UGGGAGGCGucGCUGCGG- -5'
5174 5' -62.9 NC_001798.1 + 40334 0.66 0.638096
Target:  5'- cCGCCCCCGCCC-CCGCcGUccccaGAaaCCa -3'
miRNA:   3'- uGUGGGGGUGGGaGGCGuCG-----CUgcGG- -5'
5174 5' -62.9 NC_001798.1 + 88660 0.66 0.638096
Target:  5'- uCGCCCauggCCACCaggcCCGCGGCcguGAgGCCg -3'
miRNA:   3'- uGUGGG----GGUGGga--GGCGUCG---CUgCGG- -5'
5174 5' -62.9 NC_001798.1 + 109546 0.66 0.638096
Target:  5'- gACAgCCCCGCggCCUauggCGCGGUGGCcCCg -3'
miRNA:   3'- -UGUgGGGGUG--GGAg---GCGUCGCUGcGG- -5'
5174 5' -62.9 NC_001798.1 + 137213 0.66 0.638096
Target:  5'- gGCGCaCCUCGCaggCCaUgCGCAGCaGCGCCu -3'
miRNA:   3'- -UGUG-GGGGUG---GG-AgGCGUCGcUGCGG- -5'
5174 5' -62.9 NC_001798.1 + 131056 0.66 0.637123
Target:  5'- aGCGCgaggucaCCgCGCCCaCCGCGGCGuacacggcCGCCg -3'
miRNA:   3'- -UGUG-------GGgGUGGGaGGCGUCGCu-------GCGG- -5'
5174 5' -62.9 NC_001798.1 + 70866 0.66 0.637123
Target:  5'- gACGCCgCCCugacccCCCUCaCGCGGgcccuguuuacgcUGGCGCUg -3'
miRNA:   3'- -UGUGG-GGGu-----GGGAG-GCGUC-------------GCUGCGG- -5'
5174 5' -62.9 NC_001798.1 + 82335 0.66 0.635177
Target:  5'- cGC-CCCCCACCCcagucacCCGCGaccaaacccgccgcGCGgACGCg -3'
miRNA:   3'- -UGuGGGGGUGGGa------GGCGU--------------CGC-UGCGg -5'
5174 5' -62.9 NC_001798.1 + 127915 0.66 0.628367
Target:  5'- aGC-CCCCCACgUgggcaacCCGaCGGCGGgGCCc -3'
miRNA:   3'- -UGuGGGGGUGgGa------GGC-GUCGCUgCGG- -5'
5174 5' -62.9 NC_001798.1 + 3836 0.66 0.628367
Target:  5'- gGCGCCCCC-CagaggCCGgGGCGGCuGUCg -3'
miRNA:   3'- -UGUGGGGGuGgga--GGCgUCGCUG-CGG- -5'
5174 5' -62.9 NC_001798.1 + 54831 0.66 0.628367
Target:  5'- nCACCCCCGCCg-CCGaCAccacCGcCGCCg -3'
miRNA:   3'- uGUGGGGGUGGgaGGC-GUc---GCuGCGG- -5'
5174 5' -62.9 NC_001798.1 + 70201 0.66 0.628367
Target:  5'- -aACCUCCGCCggCCGCccucccccucgAGCGA-GCCg -3'
miRNA:   3'- ugUGGGGGUGGgaGGCG-----------UCGCUgCGG- -5'
5174 5' -62.9 NC_001798.1 + 124251 0.66 0.628367
Target:  5'- gGCACCCCguggacgcgguUAUCCUgCgGCAgGCGAccCGCCg -3'
miRNA:   3'- -UGUGGGG-----------GUGGGA-GgCGU-CGCU--GCGG- -5'
5174 5' -62.9 NC_001798.1 + 4940 0.66 0.628367
Target:  5'- gACGuCCCCCGuCCUcgUCCGCcaucGCGACcucgGCCc -3'
miRNA:   3'- -UGU-GGGGGU-GGG--AGGCGu---CGCUG----CGG- -5'
5174 5' -62.9 NC_001798.1 + 79991 0.66 0.628367
Target:  5'- -gGCCCCCGgggguCCCagCGCcacuGCGuCGCCu -3'
miRNA:   3'- ugUGGGGGU-----GGGagGCGu---CGCuGCGG- -5'
5174 5' -62.9 NC_001798.1 + 117654 0.66 0.628367
Target:  5'- uCGCCggCCCugCaacCCGCGGgGACGCg -3'
miRNA:   3'- uGUGG--GGGugGga-GGCGUCgCUGCGg -5'
5174 5' -62.9 NC_001798.1 + 150251 0.66 0.628367
Target:  5'- cCGCgCCCgGCCCUcccgacCCGCGcGCGucggucGCGCCu -3'
miRNA:   3'- uGUG-GGGgUGGGA------GGCGU-CGC------UGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.