miRNA display CGI


Results 1 - 20 of 379 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5174 5' -62.9 NC_001798.1 + 105966 1.1 0.000652
Target:  5'- cACACCCCCACCCUCCGCAGCGACGCCu -3'
miRNA:   3'- -UGUGGGGGUGGGAGGCGUCGCUGCGG- -5'
5174 5' -62.9 NC_001798.1 + 145452 0.85 0.038538
Target:  5'- cGCGCCCCCGCCCggCCGCcGCG-CGCCc -3'
miRNA:   3'- -UGUGGGGGUGGGa-GGCGuCGCuGCGG- -5'
5174 5' -62.9 NC_001798.1 + 145410 0.85 0.038538
Target:  5'- cGCGCCCCCGCCCggCCGCcGCG-CGCCc -3'
miRNA:   3'- -UGUGGGGGUGGGa-GGCGuCGCuGCGG- -5'
5174 5' -62.9 NC_001798.1 + 145494 0.85 0.038538
Target:  5'- cGCGCCCCCGCCCggCCGCcGCG-CGCCc -3'
miRNA:   3'- -UGUGGGGGUGGGa-GGCGuCGCuGCGG- -5'
5174 5' -62.9 NC_001798.1 + 145536 0.84 0.046192
Target:  5'- cGCGCCCCCGCCCggCCGCccGCGucGCGCCg -3'
miRNA:   3'- -UGUGGGGGUGGGa-GGCGu-CGC--UGCGG- -5'
5174 5' -62.9 NC_001798.1 + 28962 0.82 0.064521
Target:  5'- gGCGCcgCCCCGCCgCUCCGCccgccccagggGGCGGCGCCg -3'
miRNA:   3'- -UGUG--GGGGUGG-GAGGCG-----------UCGCUGCGG- -5'
5174 5' -62.9 NC_001798.1 + 81353 0.82 0.064521
Target:  5'- uCGCCCCCACUCUCCuCAcCGACGCCa -3'
miRNA:   3'- uGUGGGGGUGGGAGGcGUcGCUGCGG- -5'
5174 5' -62.9 NC_001798.1 + 23493 0.81 0.071456
Target:  5'- cGCGCCCCCGCCagcgCCGCAGaCcACGCCg -3'
miRNA:   3'- -UGUGGGGGUGGga--GGCGUC-GcUGCGG- -5'
5174 5' -62.9 NC_001798.1 + 98615 0.8 0.087535
Target:  5'- gGC-CCCCCGCgCCUCgGgCGGCGugGCCg -3'
miRNA:   3'- -UGuGGGGGUG-GGAGgC-GUCGCugCGG- -5'
5174 5' -62.9 NC_001798.1 + 150793 0.8 0.089772
Target:  5'- cCACCCCCGCCCgcaaCGgGGCGcCGCCg -3'
miRNA:   3'- uGUGGGGGUGGGag--GCgUCGCuGCGG- -5'
5174 5' -62.9 NC_001798.1 + 118521 0.8 0.09441
Target:  5'- cGCACCCCCGCgUUCCGguGUcucgcggcccGGCGCCa -3'
miRNA:   3'- -UGUGGGGGUGgGAGGCguCG----------CUGCGG- -5'
5174 5' -62.9 NC_001798.1 + 137977 0.79 0.101795
Target:  5'- aGCGCCCCCGCCUgggcgcgCCGCAGCucgcggucgcGCGCCu -3'
miRNA:   3'- -UGUGGGGGUGGGa------GGCGUCGc---------UGCGG- -5'
5174 5' -62.9 NC_001798.1 + 75924 0.79 0.105425
Target:  5'- gACGCCCUCGCCCgcggggucgacucggUCuCGCAGCG-CGCCg -3'
miRNA:   3'- -UGUGGGGGUGGG---------------AG-GCGUCGCuGCGG- -5'
5174 5' -62.9 NC_001798.1 + 147066 0.79 0.107017
Target:  5'- -gGCCCCCGCaCCUCgGCGGCcgcccccuccGGCGCCg -3'
miRNA:   3'- ugUGGGGGUG-GGAGgCGUCG----------CUGCGG- -5'
5174 5' -62.9 NC_001798.1 + 145977 0.79 0.109722
Target:  5'- cGCGCCCgCAgCCUCCgGCAGC-ACGCCg -3'
miRNA:   3'- -UGUGGGgGUgGGAGG-CGUCGcUGCGG- -5'
5174 5' -62.9 NC_001798.1 + 23617 0.78 0.115324
Target:  5'- cCGCCCCgGCCCggacccCCGCGGCGACcgcggGCCg -3'
miRNA:   3'- uGUGGGGgUGGGa-----GGCGUCGCUG-----CGG- -5'
5174 5' -62.9 NC_001798.1 + 37069 0.78 0.115324
Target:  5'- uCGCCUCCACCguaCUCUGCAGgGACGUCg -3'
miRNA:   3'- uGUGGGGGUGG---GAGGCGUCgCUGCGG- -5'
5174 5' -62.9 NC_001798.1 + 82703 0.78 0.118224
Target:  5'- cGCGCCCCCACCCgcaUCGCuGCuucaGACGCUg -3'
miRNA:   3'- -UGUGGGGGUGGGa--GGCGuCG----CUGCGG- -5'
5174 5' -62.9 NC_001798.1 + 54472 0.78 0.129555
Target:  5'- uCGCCCCCACUCgacccCCGCGGCcccucggaggugcaGGCGCCa -3'
miRNA:   3'- uGUGGGGGUGGGa----GGCGUCG--------------CUGCGG- -5'
5174 5' -62.9 NC_001798.1 + 84438 0.78 0.130516
Target:  5'- cCACCCCCGCCg--CGCAGCGugGCg -3'
miRNA:   3'- uGUGGGGGUGGgagGCGUCGCugCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.