miRNA display CGI


Results 21 - 40 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5175 3' -62.3 NC_001798.1 + 43677 0.66 0.628935
Target:  5'- gGCuGGGGuCGugGGUGGUC-ACgGCCCGg -3'
miRNA:   3'- -UGcCCCC-GCugUCGCCAGcUG-UGGGU- -5'
5175 3' -62.3 NC_001798.1 + 58702 0.66 0.628935
Target:  5'- cGCGGcGGCG-CGGgGGUCGAucCACCa- -3'
miRNA:   3'- -UGCCcCCGCuGUCgCCAGCU--GUGGgu -5'
5175 3' -62.3 NC_001798.1 + 121865 0.66 0.628935
Target:  5'- cCGGGaGGCGACAcggccaccGCGGagGACGugUCCAu -3'
miRNA:   3'- uGCCC-CCGCUGU--------CGCCagCUGU--GGGU- -5'
5175 3' -62.3 NC_001798.1 + 154115 0.66 0.628935
Target:  5'- cCGGGGacccCGGCGGCGGg-GAC-CCCGg -3'
miRNA:   3'- uGCCCCc---GCUGUCGCCagCUGuGGGU- -5'
5175 3' -62.3 NC_001798.1 + 63266 0.66 0.626007
Target:  5'- uCGGGGGCGGgGGCGGaauacaggGGCugcauauggaucagGCCCAg -3'
miRNA:   3'- uGCCCCCGCUgUCGCCag------CUG--------------UGGGU- -5'
5175 3' -62.3 NC_001798.1 + 3214 0.66 0.623079
Target:  5'- gGCGGGcGCGGCgcucaggcgccccagGGCGG-CGAgCACCCc -3'
miRNA:   3'- -UGCCCcCGCUG---------------UCGCCaGCU-GUGGGu -5'
5175 3' -62.3 NC_001798.1 + 12605 0.66 0.619176
Target:  5'- uUGGGGGCcaucugagcGCGGCGG-CG-UACCCAa -3'
miRNA:   3'- uGCCCCCGc--------UGUCGCCaGCuGUGGGU- -5'
5175 3' -62.3 NC_001798.1 + 92107 0.66 0.619176
Target:  5'- gACGGcGGGCaGCAGCcGUCGAcCACgCGc -3'
miRNA:   3'- -UGCC-CCCGcUGUCGcCAGCU-GUGgGU- -5'
5175 3' -62.3 NC_001798.1 + 101984 0.66 0.619176
Target:  5'- -gGGGGGCGAUGuGCGG-CGGCGgCa- -3'
miRNA:   3'- ugCCCCCGCUGU-CGCCaGCUGUgGgu -5'
5175 3' -62.3 NC_001798.1 + 153807 0.66 0.619176
Target:  5'- gGCGGGGGgcaGGCGGCGG-CaGGCGCg-- -3'
miRNA:   3'- -UGCCCCCg--CUGUCGCCaG-CUGUGggu -5'
5175 3' -62.3 NC_001798.1 + 27029 0.66 0.619176
Target:  5'- gGCGGGGGUcgGGCgGGCGGcaCGucucccGCGCCCGc -3'
miRNA:   3'- -UGCCCCCG--CUG-UCGCCa-GC------UGUGGGU- -5'
5175 3' -62.3 NC_001798.1 + 104518 0.66 0.619176
Target:  5'- cGCGGcGGCGGC-GCGGUUGACGUCg- -3'
miRNA:   3'- -UGCCcCCGCUGuCGCCAGCUGUGGgu -5'
5175 3' -62.3 NC_001798.1 + 29948 0.66 0.61625
Target:  5'- gACGGGGcCGACccccggcccgcuuaAGCGGUCGGgggACCCc -3'
miRNA:   3'- -UGCCCCcGCUG--------------UCGCCAGCUg--UGGGu -5'
5175 3' -62.3 NC_001798.1 + 11176 0.67 0.609426
Target:  5'- gAUGGGGGCGGuggGGCGGgccugcCGAacgGCCCGc -3'
miRNA:   3'- -UGCCCCCGCUg--UCGCCa-----GCUg--UGGGU- -5'
5175 3' -62.3 NC_001798.1 + 129863 0.67 0.609426
Target:  5'- uACGGGGGagGAgGGgGGUgGugGCCgAa -3'
miRNA:   3'- -UGCCCCCg-CUgUCgCCAgCugUGGgU- -5'
5175 3' -62.3 NC_001798.1 + 27527 0.67 0.608452
Target:  5'- nGCGGGaaggcagccccgcGGCGcGCGGgGGgaggggCGGCGCCCGc -3'
miRNA:   3'- -UGCCC-------------CCGC-UGUCgCCa-----GCUGUGGGU- -5'
5175 3' -62.3 NC_001798.1 + 95535 0.67 0.608452
Target:  5'- cGCGGGcauGGCGA--GUGGUCGACcgacgcgGCCCu -3'
miRNA:   3'- -UGCCC---CCGCUguCGCCAGCUG-------UGGGu -5'
5175 3' -62.3 NC_001798.1 + 103652 0.67 0.603583
Target:  5'- -gGGGGGUGGaAGCGGgcaagggaauacagCGAUGCCCc -3'
miRNA:   3'- ugCCCCCGCUgUCGCCa-------------GCUGUGGGu -5'
5175 3' -62.3 NC_001798.1 + 148305 0.67 0.599692
Target:  5'- gGCGGGGugggGUGAguGCGGUUGcAUGCCUc -3'
miRNA:   3'- -UGCCCC----CGCUguCGCCAGC-UGUGGGu -5'
5175 3' -62.3 NC_001798.1 + 113654 0.67 0.599692
Target:  5'- gUGGGuGGCGGCGGCGGacugcuUUGcCGCCUu -3'
miRNA:   3'- uGCCC-CCGCUGUCGCC------AGCuGUGGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.