miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5176 3' -52.3 NC_001798.1 + 122603 0.66 0.986543
Target:  5'- cUGCGGgccCUGGGCCacUCUAUCcgggCCGCGc -3'
miRNA:   3'- cAUGCUa--GACUUGG--AGGUAGa---GGCGC- -5'
5176 3' -52.3 NC_001798.1 + 4902 0.66 0.984818
Target:  5'- ---aGAUCcgGGGCCgccggUCGUCUCCGCc -3'
miRNA:   3'- caugCUAGa-CUUGGa----GGUAGAGGCGc -5'
5176 3' -52.3 NC_001798.1 + 70031 0.66 0.982929
Target:  5'- -gGCGGcagucauucccgUUUGGGCCcgCgGUCUCCGCGc -3'
miRNA:   3'- caUGCU------------AGACUUGGa-GgUAGAGGCGC- -5'
5176 3' -52.3 NC_001798.1 + 49820 0.66 0.978627
Target:  5'- -cGCGAgcacCUGAACCUCCcgCUggUGCGa -3'
miRNA:   3'- caUGCUa---GACUUGGAGGuaGAg-GCGC- -5'
5176 3' -52.3 NC_001798.1 + 57296 0.66 0.978627
Target:  5'- --cCGAUCUcGGCgUCCGUCgCCGUGg -3'
miRNA:   3'- cauGCUAGAcUUGgAGGUAGaGGCGC- -5'
5176 3' -52.3 NC_001798.1 + 53751 0.66 0.978627
Target:  5'- cUGCGG-CUGAgcgagcuccugGCCUaCGUCUCCGUGu -3'
miRNA:   3'- cAUGCUaGACU-----------UGGAgGUAGAGGCGC- -5'
5176 3' -52.3 NC_001798.1 + 95073 0.67 0.976197
Target:  5'- -gGCGc-CUGGACgUCCAUgUUCGCGa -3'
miRNA:   3'- caUGCuaGACUUGgAGGUAgAGGCGC- -5'
5176 3' -52.3 NC_001798.1 + 31452 0.67 0.97357
Target:  5'- -aGCGAcUCUcccCCgCCGUCUCCGCGc -3'
miRNA:   3'- caUGCU-AGAcuuGGaGGUAGAGGCGC- -5'
5176 3' -52.3 NC_001798.1 + 39930 0.67 0.967699
Target:  5'- -gAUGGccUCcGccCCUCCGUCUCCGCa -3'
miRNA:   3'- caUGCU--AGaCuuGGAGGUAGAGGCGc -5'
5176 3' -52.3 NC_001798.1 + 16303 0.67 0.96444
Target:  5'- aGUuCGAUCUGGuaCUCgaauGUCUCCGCGg -3'
miRNA:   3'- -CAuGCUAGACUugGAGg---UAGAGGCGC- -5'
5176 3' -52.3 NC_001798.1 + 29094 0.67 0.96444
Target:  5'- -gGCGGUCccGGCCgCCAUCcCCGCGc -3'
miRNA:   3'- caUGCUAGacUUGGaGGUAGaGGCGC- -5'
5176 3' -52.3 NC_001798.1 + 86340 0.68 0.960958
Target:  5'- aUGCGAcgcCUGAggGCgUCCGUCgUCCGCu -3'
miRNA:   3'- cAUGCUa--GACU--UGgAGGUAG-AGGCGc -5'
5176 3' -52.3 NC_001798.1 + 32732 0.68 0.960958
Target:  5'- -gGCGcgCUGGACUUCCAcggcCUCCGg- -3'
miRNA:   3'- caUGCuaGACUUGGAGGUa---GAGGCgc -5'
5176 3' -52.3 NC_001798.1 + 150315 0.68 0.957247
Target:  5'- gGUGuCGGUCUGAGCCUggGUCaUgCGCGa -3'
miRNA:   3'- -CAU-GCUAGACUUGGAggUAG-AgGCGC- -5'
5176 3' -52.3 NC_001798.1 + 144184 0.68 0.953301
Target:  5'- --uCGGUCUGGcACCgacggUCAUaCUCCGCGa -3'
miRNA:   3'- cauGCUAGACU-UGGa----GGUA-GAGGCGC- -5'
5176 3' -52.3 NC_001798.1 + 49124 0.7 0.893746
Target:  5'- -gACGAUCUGGGCUUCagcgcggGUC-CCGCGc -3'
miRNA:   3'- caUGCUAGACUUGGAGg------UAGaGGCGC- -5'
5176 3' -52.3 NC_001798.1 + 102420 0.79 0.436495
Target:  5'- -gGCGAUCUGGGCCUCCAggggaCUggggcCCGCGa -3'
miRNA:   3'- caUGCUAGACUUGGAGGUa----GA-----GGCGC- -5'
5176 3' -52.3 NC_001798.1 + 105166 1.1 0.005584
Target:  5'- cGUACGAUCUGAACCUCCAUCUCCGCGg -3'
miRNA:   3'- -CAUGCUAGACUUGGAGGUAGAGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.