miRNA display CGI


Results 1 - 20 of 297 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5176 5' -65.5 NC_001798.1 + 79374 0.66 0.549785
Target:  5'- gCCgGCGGccagacGGGCG-CgGGCGCggaguccgcgcccgcGCCCCu -3'
miRNA:   3'- -GGgCGCCa-----CCCGCuG-CCGCGa--------------CGGGG- -5'
5176 5' -65.5 NC_001798.1 + 130705 0.66 0.54886
Target:  5'- aCCGCGGc-GGCGGCcGUGCacaggagggUGCCCa -3'
miRNA:   3'- gGGCGCCacCCGCUGcCGCG---------ACGGGg -5'
5176 5' -65.5 NC_001798.1 + 58618 0.66 0.54886
Target:  5'- gCgGCGGUGgcGGgGACaGGCcuuggaaaaGCUGUCCCc -3'
miRNA:   3'- gGgCGCCAC--CCgCUG-CCG---------CGACGGGG- -5'
5176 5' -65.5 NC_001798.1 + 57510 0.66 0.54886
Target:  5'- cCuuGCGGgguuggggGGGCGugGGUGUgGUUCg -3'
miRNA:   3'- -GggCGCCa-------CCCGCugCCGCGaCGGGg -5'
5176 5' -65.5 NC_001798.1 + 33379 0.66 0.54886
Target:  5'- aCCCuggggGUGGUGGGCaggaguggGAgGGCGCcugGCUCg -3'
miRNA:   3'- -GGG-----CGCCACCCG--------CUgCCGCGa--CGGGg -5'
5176 5' -65.5 NC_001798.1 + 100289 0.66 0.54886
Target:  5'- gCUCGCGGccGGgGACGuGCuacaGCcGCCCCc -3'
miRNA:   3'- -GGGCGCCacCCgCUGC-CG----CGaCGGGG- -5'
5176 5' -65.5 NC_001798.1 + 2592 0.66 0.547011
Target:  5'- -gCGCGGcucuucuucgggGGGCGcGgGGCGCcGCCCg -3'
miRNA:   3'- ggGCGCCa-----------CCCGC-UgCCGCGaCGGGg -5'
5176 5' -65.5 NC_001798.1 + 134179 0.66 0.54332
Target:  5'- gCCCGCGcc--GCGACGGCcccggccgccuccccGCUggaGCCCCu -3'
miRNA:   3'- -GGGCGCcaccCGCUGCCG---------------CGA---CGGGG- -5'
5176 5' -65.5 NC_001798.1 + 90463 0.66 0.54332
Target:  5'- cCCCG-GGUuguccaggauaaaccGGGUGGUGGCGUcgacGCCCCc -3'
miRNA:   3'- -GGGCgCCA---------------CCCGCUGCCGCGa---CGGGG- -5'
5176 5' -65.5 NC_001798.1 + 29436 0.66 0.539638
Target:  5'- -gCGuCGGcGGGgGGCGGCGCaUGCUa- -3'
miRNA:   3'- ggGC-GCCaCCCgCUGCCGCG-ACGGgg -5'
5176 5' -65.5 NC_001798.1 + 90400 0.66 0.539638
Target:  5'- -gCGCGGuUGGGC--CGGCGCguUCCCg -3'
miRNA:   3'- ggGCGCC-ACCCGcuGCCGCGacGGGG- -5'
5176 5' -65.5 NC_001798.1 + 147998 0.66 0.539638
Target:  5'- gCCacaGCcGUGGGUG-UGGCGCccGUCCCc -3'
miRNA:   3'- -GGg--CGcCACCCGCuGCCGCGa-CGGGG- -5'
5176 5' -65.5 NC_001798.1 + 2463 0.66 0.539638
Target:  5'- cCCUGCGGgucgGGGCccuCGGCGg-GCCg- -3'
miRNA:   3'- -GGGCGCCa---CCCGcu-GCCGCgaCGGgg -5'
5176 5' -65.5 NC_001798.1 + 78560 0.66 0.539638
Target:  5'- gCCUGCGG-GaGGCGcuggccgcgcGCGaGCGCcggGCCCa -3'
miRNA:   3'- -GGGCGCCaC-CCGC----------UGC-CGCGa--CGGGg -5'
5176 5' -65.5 NC_001798.1 + 53531 0.66 0.539638
Target:  5'- cCCCGacgaccCGGcGGGCGACuGCGa--CCCCa -3'
miRNA:   3'- -GGGC------GCCaCCCGCUGcCGCgacGGGG- -5'
5176 5' -65.5 NC_001798.1 + 129343 0.66 0.530469
Target:  5'- gCCGCGGagcgcccgccGGGCc-UGGCGggGCCCCc -3'
miRNA:   3'- gGGCGCCa---------CCCGcuGCCGCgaCGGGG- -5'
5176 5' -65.5 NC_001798.1 + 1500 0.66 0.530469
Target:  5'- gCCCGCGcccGaGGCGGCGGCccgGCcGUCCa -3'
miRNA:   3'- -GGGCGCca-C-CCGCUGCCG---CGaCGGGg -5'
5176 5' -65.5 NC_001798.1 + 46692 0.66 0.530469
Target:  5'- aCCGCGG-GGGCGugaauaaucGCGCagaaGUCCCg -3'
miRNA:   3'- gGGCGCCaCCCGCugc------CGCGa---CGGGG- -5'
5176 5' -65.5 NC_001798.1 + 25695 0.66 0.530469
Target:  5'- gCCCGCcacGGccgccUGGGCGGgcaacuggacCGGCGC--CCCCg -3'
miRNA:   3'- -GGGCG---CC-----ACCCGCU----------GCCGCGacGGGG- -5'
5176 5' -65.5 NC_001798.1 + 84734 0.66 0.529555
Target:  5'- uCCUGCGuaugugGGGCGGCggggccgucgGGCGCUuuuauagGCCCg -3'
miRNA:   3'- -GGGCGCca----CCCGCUG----------CCGCGA-------CGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.