miRNA display CGI


Results 1 - 20 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5177 3' -56 NC_001798.1 + 95579 0.66 0.916629
Target:  5'- cCACGAg-GCGGAGGCccuGGucaGCCAGCucgGCg -3'
miRNA:   3'- -GUGCUgaCGUCUCUGu--CC---UGGUCG---CG- -5'
5177 3' -56 NC_001798.1 + 16218 0.66 0.916629
Target:  5'- aCGCGccgcCUGUggGGGGGCgguGGGGCCGGgGCc -3'
miRNA:   3'- -GUGCu---GACG--UCUCUG---UCCUGGUCgCG- -5'
5177 3' -56 NC_001798.1 + 42756 0.66 0.916629
Target:  5'- gCACaGACggGCGGcGcGCGGGGCCgacaGGCGCu -3'
miRNA:   3'- -GUG-CUGa-CGUCuC-UGUCCUGG----UCGCG- -5'
5177 3' -56 NC_001798.1 + 3322 0.66 0.916629
Target:  5'- gGCGGCgGCGGcGGCGGGcuucccGCgGGCGUc -3'
miRNA:   3'- gUGCUGaCGUCuCUGUCC------UGgUCGCG- -5'
5177 3' -56 NC_001798.1 + 22791 0.66 0.916629
Target:  5'- gGCcGCgGCGGAGAC--GACCGGCGg -3'
miRNA:   3'- gUGcUGaCGUCUCUGucCUGGUCGCg -5'
5177 3' -56 NC_001798.1 + 69492 0.66 0.916629
Target:  5'- aGCGAUggGCGGGcGCAGGAC--GCGCc -3'
miRNA:   3'- gUGCUGa-CGUCUcUGUCCUGguCGCG- -5'
5177 3' -56 NC_001798.1 + 92104 0.66 0.916629
Target:  5'- gACGACgGCGGGcaGCAGccgucGACCAcGCGCg -3'
miRNA:   3'- gUGCUGaCGUCUc-UGUC-----CUGGU-CGCG- -5'
5177 3' -56 NC_001798.1 + 153072 0.66 0.910744
Target:  5'- uGgGGCggGCGGAGcgGCGGGG-CGGCGCc -3'
miRNA:   3'- gUgCUGa-CGUCUC--UGUCCUgGUCGCG- -5'
5177 3' -56 NC_001798.1 + 4076 0.66 0.910744
Target:  5'- cCGCGgucGCcGCGGGGGuCcGGGCCGGgGCg -3'
miRNA:   3'- -GUGC---UGaCGUCUCU-GuCCUGGUCgCG- -5'
5177 3' -56 NC_001798.1 + 10691 0.66 0.910744
Target:  5'- cCACGACgggcGCAGGGgaccGCAGGcauCCAGgGg -3'
miRNA:   3'- -GUGCUGa---CGUCUC----UGUCCu--GGUCgCg -5'
5177 3' -56 NC_001798.1 + 78555 0.66 0.910744
Target:  5'- gGCGGgcCUGCgGGAGGCGcuGGCCGcGCGCg -3'
miRNA:   3'- gUGCU--GACG-UCUCUGUc-CUGGU-CGCG- -5'
5177 3' -56 NC_001798.1 + 89584 0.66 0.910744
Target:  5'- gCGCGACgGCGGAaagcucCAGGugCGGCa- -3'
miRNA:   3'- -GUGCUGaCGUCUcu----GUCCugGUCGcg -5'
5177 3' -56 NC_001798.1 + 153955 0.66 0.910744
Target:  5'- aGCG-CcGCAGgagcgaGGACGcGGCCGGCGCg -3'
miRNA:   3'- gUGCuGaCGUC------UCUGUcCUGGUCGCG- -5'
5177 3' -56 NC_001798.1 + 85931 0.66 0.910744
Target:  5'- gCGCGGggGCGGAGACAGcuGCUgcacGCGCg -3'
miRNA:   3'- -GUGCUgaCGUCUCUGUCc-UGGu---CGCG- -5'
5177 3' -56 NC_001798.1 + 83010 0.66 0.910143
Target:  5'- aACaGCUGCAGcGGacccGCAGGGCgcuguuuCAGCGCa -3'
miRNA:   3'- gUGcUGACGUC-UC----UGUCCUG-------GUCGCG- -5'
5177 3' -56 NC_001798.1 + 3424 0.66 0.904623
Target:  5'- gCGCGcCaGCAGGGGCGcguaGGCgCGGCGCa -3'
miRNA:   3'- -GUGCuGaCGUCUCUGUc---CUG-GUCGCG- -5'
5177 3' -56 NC_001798.1 + 8554 0.66 0.904623
Target:  5'- uCGCGGCga-GGGGugGGGGCgaagaaGGCGCc -3'
miRNA:   3'- -GUGCUGacgUCUCugUCCUGg-----UCGCG- -5'
5177 3' -56 NC_001798.1 + 90570 0.66 0.904623
Target:  5'- gCACGAagacGCGGuAGuACAGGGuCgGGCGCg -3'
miRNA:   3'- -GUGCUga--CGUC-UC-UGUCCU-GgUCGCG- -5'
5177 3' -56 NC_001798.1 + 23780 0.66 0.904623
Target:  5'- cCGCGACggguacgucaGCGGGGAgccguggccCGGGGCCGGCc- -3'
miRNA:   3'- -GUGCUGa---------CGUCUCU---------GUCCUGGUCGcg -5'
5177 3' -56 NC_001798.1 + 2567 0.66 0.904623
Target:  5'- gGCGGCcGCGG-GGCGGGGggcguCC-GCGCg -3'
miRNA:   3'- gUGCUGaCGUCuCUGUCCU-----GGuCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.