miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5177 5' -53.2 NC_001798.1 + 39709 0.66 0.984278
Target:  5'- gGGAUgcgGUGCCUugGUCgaCGggGGUUGGa -3'
miRNA:   3'- -CCUGua-CGCGGG--CAGa-GCuuUCAGCC- -5'
5177 5' -53.2 NC_001798.1 + 30992 0.66 0.980323
Target:  5'- cGGGCggGgGUCgGg--CGggGGUCGGg -3'
miRNA:   3'- -CCUGuaCgCGGgCagaGCuuUCAGCC- -5'
5177 5' -53.2 NC_001798.1 + 31025 0.66 0.980323
Target:  5'- cGGGCggGgGUCgGg--CGggGGUCGGg -3'
miRNA:   3'- -CCUGuaCgCGGgCagaGCuuUCAGCC- -5'
5177 5' -53.2 NC_001798.1 + 59695 0.66 0.980323
Target:  5'- cGGGCA--CGCCCGUCuUCGGgcGcUUGGu -3'
miRNA:   3'- -CCUGUacGCGGGCAG-AGCUuuC-AGCC- -5'
5177 5' -53.2 NC_001798.1 + 89903 0.66 0.980323
Target:  5'- cGGccguuCAUGCGCCCGUaccCGucGAG-CGGg -3'
miRNA:   3'- -CCu----GUACGCGGGCAga-GCu-UUCaGCC- -5'
5177 5' -53.2 NC_001798.1 + 131656 0.66 0.980323
Target:  5'- cGGACAcgagUGUGCUgguCGUCUCcuGucGUCGGa -3'
miRNA:   3'- -CCUGU----ACGCGG---GCAGAGc-UuuCAGCC- -5'
5177 5' -53.2 NC_001798.1 + 56105 0.66 0.980323
Target:  5'- cGGCGUGCGCCg--UUCGGA--UCGGg -3'
miRNA:   3'- cCUGUACGCGGgcaGAGCUUucAGCC- -5'
5177 5' -53.2 NC_001798.1 + 88313 0.66 0.978087
Target:  5'- cGGugAUGCGCCgaugggCGUCUaCG-AGGaCGGc -3'
miRNA:   3'- -CCugUACGCGG------GCAGA-GCuUUCaGCC- -5'
5177 5' -53.2 NC_001798.1 + 43825 0.66 0.978087
Target:  5'- -----cGCGCCgGUCUCGcguacGUCGGc -3'
miRNA:   3'- ccuguaCGCGGgCAGAGCuuu--CAGCC- -5'
5177 5' -53.2 NC_001798.1 + 95292 0.66 0.978087
Target:  5'- aGGGCcggguuuguGUGCGCggcgucgaGUCUCGggGG-CGGg -3'
miRNA:   3'- -CCUG---------UACGCGgg------CAGAGCuuUCaGCC- -5'
5177 5' -53.2 NC_001798.1 + 1444 0.66 0.975669
Target:  5'- cGGugcgaGUGCGCCuCGUCcUCGcaGAAGUcCGGc -3'
miRNA:   3'- -CCug---UACGCGG-GCAG-AGC--UUUCA-GCC- -5'
5177 5' -53.2 NC_001798.1 + 34577 0.66 0.975669
Target:  5'- cGGACGgcucacgcgGCGCggCGUCUCGguGGgacgCGGg -3'
miRNA:   3'- -CCUGUa--------CGCGg-GCAGAGCuuUCa---GCC- -5'
5177 5' -53.2 NC_001798.1 + 148410 0.66 0.975669
Target:  5'- cGGGCGggguggGCGCCgGgg-CGggGGUgGGc -3'
miRNA:   3'- -CCUGUa-----CGCGGgCagaGCuuUCAgCC- -5'
5177 5' -53.2 NC_001798.1 + 30955 0.67 0.973062
Target:  5'- gGGGCggGCGgggGUCgggCGggGGUCGGg -3'
miRNA:   3'- -CCUGuaCGCgggCAGa--GCuuUCAGCC- -5'
5177 5' -53.2 NC_001798.1 + 47246 0.67 0.973062
Target:  5'- uGGGCG-GCcCCCGgccuuugcuuccUCgCGGAAGUCGGg -3'
miRNA:   3'- -CCUGUaCGcGGGC------------AGaGCUUUCAGCC- -5'
5177 5' -53.2 NC_001798.1 + 118933 0.67 0.970259
Target:  5'- cGGACGUGCGCCUG------GAGUCGc -3'
miRNA:   3'- -CCUGUACGCGGGCagagcuUUCAGCc -5'
5177 5' -53.2 NC_001798.1 + 2576 0.67 0.970259
Target:  5'- gGGGCGggggGCGUCCGcgcggcucuUCuUCGggGGgcgCGGg -3'
miRNA:   3'- -CCUGUa---CGCGGGC---------AG-AGCuuUCa--GCC- -5'
5177 5' -53.2 NC_001798.1 + 31767 0.67 0.970259
Target:  5'- cGGGCAgGCGCgaCCGaCgcgCGcgGGUCGGg -3'
miRNA:   3'- -CCUGUaCGCG--GGCaGa--GCuuUCAGCC- -5'
5177 5' -53.2 NC_001798.1 + 10341 0.67 0.969674
Target:  5'- cGGCGUGCGUUCGUCacgcccgcgucgucuUCuucgucguagucgucGggGGUCGGg -3'
miRNA:   3'- cCUGUACGCGGGCAG---------------AG---------------CuuUCAGCC- -5'
5177 5' -53.2 NC_001798.1 + 57441 0.67 0.967252
Target:  5'- aGGAUGUcuucggGgGCCCgGUCUUGggGGgCGGg -3'
miRNA:   3'- -CCUGUA------CgCGGG-CAGAGCuuUCaGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.