miRNA display CGI


Results 21 - 40 of 40 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5177 5' -53.2 NC_001798.1 + 3783 0.67 0.967252
Target:  5'- cGGGCGccgggGCGCCCGaggcCUCGAAc--CGGg -3'
miRNA:   3'- -CCUGUa----CGCGGGCa---GAGCUUucaGCC- -5'
5177 5' -53.2 NC_001798.1 + 27560 0.67 0.960607
Target:  5'- gGGGCG-GCGCCCG-CggGGGAG-CGGc -3'
miRNA:   3'- -CCUGUaCGCGGGCaGagCUUUCaGCC- -5'
5177 5' -53.2 NC_001798.1 + 31241 0.68 0.956958
Target:  5'- cGGCG-GCGcCCCGUUgcgggCGggGGUgGGa -3'
miRNA:   3'- cCUGUaCGC-GGGCAGa----GCuuUCAgCC- -5'
5177 5' -53.2 NC_001798.1 + 103005 0.68 0.953085
Target:  5'- gGGGCccagGUGCGCCCGgccagCGcGAGcUCGGc -3'
miRNA:   3'- -CCUG----UACGCGGGCaga--GCuUUC-AGCC- -5'
5177 5' -53.2 NC_001798.1 + 44486 0.68 0.953085
Target:  5'- uGGGCcggGUGCGCCC-UUUCGGGuGGUgGGu -3'
miRNA:   3'- -CCUG---UACGCGGGcAGAGCUU-UCAgCC- -5'
5177 5' -53.2 NC_001798.1 + 52730 0.68 0.94465
Target:  5'- cGGACGUGCGCgCCGcCgCGGAAcacgUGGa -3'
miRNA:   3'- -CCUGUACGCG-GGCaGaGCUUUca--GCC- -5'
5177 5' -53.2 NC_001798.1 + 54053 0.68 0.940084
Target:  5'- gGGAuCGUGgaCGCCauCGUCUCGAccGUCGa -3'
miRNA:   3'- -CCU-GUAC--GCGG--GCAGAGCUuuCAGCc -5'
5177 5' -53.2 NC_001798.1 + 25723 0.68 0.935281
Target:  5'- uGGACcgGCGCCCccgacGUCUCGGcgc-UGGg -3'
miRNA:   3'- -CCUGuaCGCGGG-----CAGAGCUuucaGCC- -5'
5177 5' -53.2 NC_001798.1 + 88762 0.68 0.935281
Target:  5'- -cGCAUGcCGgCCGcCUCcgGAAAGUCGGc -3'
miRNA:   3'- ccUGUAC-GCgGGCaGAG--CUUUCAGCC- -5'
5177 5' -53.2 NC_001798.1 + 66775 0.68 0.935281
Target:  5'- cGGCGUGgGCCgCGgaaUCG-GAGUCGGc -3'
miRNA:   3'- cCUGUACgCGG-GCag-AGCuUUCAGCC- -5'
5177 5' -53.2 NC_001798.1 + 137451 0.68 0.935281
Target:  5'- gGGACGcGCucGCCCGgaaaUCggCGggGGUUGGg -3'
miRNA:   3'- -CCUGUaCG--CGGGC----AGa-GCuuUCAGCC- -5'
5177 5' -53.2 NC_001798.1 + 11635 0.69 0.919445
Target:  5'- cGGGCGcggGCGUCCcuguGUCcccgggggCGggGGUCGGg -3'
miRNA:   3'- -CCUGUa--CGCGGG----CAGa-------GCuuUCAGCC- -5'
5177 5' -53.2 NC_001798.1 + 135030 0.69 0.919445
Target:  5'- cGGGCAUGgcCGgCCGUggcCUCGGAGG-CGGc -3'
miRNA:   3'- -CCUGUAC--GCgGGCA---GAGCUUUCaGCC- -5'
5177 5' -53.2 NC_001798.1 + 76066 0.69 0.913691
Target:  5'- aGGACGUGCggauccagGCCCGccgggcgaUCGAGAGcgCGGu -3'
miRNA:   3'- -CCUGUACG--------CGGGCag------AGCUUUCa-GCC- -5'
5177 5' -53.2 NC_001798.1 + 27399 0.69 0.9077
Target:  5'- cGGugGUGCGaCUggCGUCuUCGggGGggCGGg -3'
miRNA:   3'- -CCugUACGC-GG--GCAG-AGCuuUCa-GCC- -5'
5177 5' -53.2 NC_001798.1 + 137622 0.71 0.835501
Target:  5'- cGGugAUgagcGCGCCCG-CUCGggGGgcgCGa -3'
miRNA:   3'- -CCugUA----CGCGGGCaGAGCuuUCa--GCc -5'
5177 5' -53.2 NC_001798.1 + 44231 0.72 0.809966
Target:  5'- gGGACAUGCGCCCGaCgaccgagcgcaUCGAuucGcCGGg -3'
miRNA:   3'- -CCUGUACGCGGGCaG-----------AGCUuu-CaGCC- -5'
5177 5' -53.2 NC_001798.1 + 85894 0.72 0.80023
Target:  5'- aGGAC-UGCGCCCGccugCUCGAcugcaccgagggcAAGcgCGGg -3'
miRNA:   3'- -CCUGuACGCGGGCa---GAGCU-------------UUCa-GCC- -5'
5177 5' -53.2 NC_001798.1 + 151673 0.75 0.655185
Target:  5'- --cCGUGCuGCCCGcCUCGGAGGUgGGu -3'
miRNA:   3'- ccuGUACG-CGGGCaGAGCUUUCAgCC- -5'
5177 5' -53.2 NC_001798.1 + 104975 1.12 0.004344
Target:  5'- uGGACAUGCGCCCGUCUCGAAAGUCGGc -3'
miRNA:   3'- -CCUGUACGCGGGCAGAGCUUUCAGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.