miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5178 3' -54.3 NC_001798.1 + 35368 0.65 0.97178
Target:  5'- -cCCAACGUGG-GAguguuuaauggaAgGGCGUGGGg -3'
miRNA:   3'- guGGUUGCACCgCUag----------UgCUGCACCC- -5'
5178 3' -54.3 NC_001798.1 + 90789 0.66 0.970074
Target:  5'- uGCCGuagACGUgaacGGCGA-CGCGAUGgcuucgGGGg -3'
miRNA:   3'- gUGGU---UGCA----CCGCUaGUGCUGCa-----CCC- -5'
5178 3' -54.3 NC_001798.1 + 108825 0.66 0.970074
Target:  5'- gGCCucGACGUGGCccgugggcGUCugGACGacGGGc -3'
miRNA:   3'- gUGG--UUGCACCGc-------UAGugCUGCa-CCC- -5'
5178 3' -54.3 NC_001798.1 + 66746 0.66 0.970074
Target:  5'- aACCGGCGccacguccgccUGGgGugcgGCGGCGUGGGc -3'
miRNA:   3'- gUGGUUGC-----------ACCgCuag-UGCUGCACCC- -5'
5178 3' -54.3 NC_001798.1 + 1756 0.66 0.970074
Target:  5'- gGCCAGCGcacGGCGcacugCACGGCG-GGc -3'
miRNA:   3'- gUGGUUGCa--CCGCua---GUGCUGCaCCc -5'
5178 3' -54.3 NC_001798.1 + 85806 0.66 0.967067
Target:  5'- gGCCucCGggGGCGAUgACGGgGgGGGg -3'
miRNA:   3'- gUGGuuGCa-CCGCUAgUGCUgCaCCC- -5'
5178 3' -54.3 NC_001798.1 + 26519 0.66 0.963854
Target:  5'- gGCCGcgGCG-GGCG---GCGGCGUGGa -3'
miRNA:   3'- gUGGU--UGCaCCGCuagUGCUGCACCc -5'
5178 3' -54.3 NC_001798.1 + 44297 0.66 0.960427
Target:  5'- uGCCGAUGcgGGCGGggGCGuuGUGGa -3'
miRNA:   3'- gUGGUUGCa-CCGCUagUGCugCACCc -5'
5178 3' -54.3 NC_001798.1 + 3356 0.66 0.960072
Target:  5'- uCGCCGuCGUGGCGGU--UGGCGUcgccgccgucgucGGGg -3'
miRNA:   3'- -GUGGUuGCACCGCUAguGCUGCA-------------CCC- -5'
5178 3' -54.3 NC_001798.1 + 36416 0.66 0.956782
Target:  5'- uGCCGggcgggGCGguggGGCGGggucggggUCGCGGCG-GGGa -3'
miRNA:   3'- gUGGU------UGCa---CCGCU--------AGUGCUGCaCCC- -5'
5178 3' -54.3 NC_001798.1 + 39576 0.66 0.956782
Target:  5'- gCGCCGACGcGG-GGUgGCGACccccuugguuGUGGGc -3'
miRNA:   3'- -GUGGUUGCaCCgCUAgUGCUG----------CACCC- -5'
5178 3' -54.3 NC_001798.1 + 78246 0.66 0.956782
Target:  5'- gGCCGACGUgcaccgGGCGcUCGgCGGCGUGc- -3'
miRNA:   3'- gUGGUUGCA------CCGCuAGU-GCUGCACcc -5'
5178 3' -54.3 NC_001798.1 + 150365 0.66 0.956782
Target:  5'- cCACCGGCacGGCGG--GCGGCGcGGGc -3'
miRNA:   3'- -GUGGUUGcaCCGCUagUGCUGCaCCC- -5'
5178 3' -54.3 NC_001798.1 + 130526 0.67 0.952915
Target:  5'- uGCCggUGgcGGCGAUgGCcccGAgGUGGGg -3'
miRNA:   3'- gUGGuuGCa-CCGCUAgUG---CUgCACCC- -5'
5178 3' -54.3 NC_001798.1 + 130197 0.67 0.952915
Target:  5'- -cUCGGCGUGGUGGgaCACGcucGCGUaGGGg -3'
miRNA:   3'- guGGUUGCACCGCUa-GUGC---UGCA-CCC- -5'
5178 3' -54.3 NC_001798.1 + 129735 0.67 0.948822
Target:  5'- aCACCAAC--GGCGGgacCcCGACGUGGc -3'
miRNA:   3'- -GUGGUUGcaCCGCUa--GuGCUGCACCc -5'
5178 3' -54.3 NC_001798.1 + 30923 0.67 0.948822
Target:  5'- gGCCGAC--GGUGAggGCGGCG-GGGg -3'
miRNA:   3'- gUGGUUGcaCCGCUagUGCUGCaCCC- -5'
5178 3' -54.3 NC_001798.1 + 45184 0.67 0.948822
Target:  5'- cCAUCGACGgGGCcGUUGCGGCGcaucGGGa -3'
miRNA:   3'- -GUGGUUGCaCCGcUAGUGCUGCa---CCC- -5'
5178 3' -54.3 NC_001798.1 + 117063 0.67 0.9484
Target:  5'- cCGCCAGCccGUGGUgcagcacgcccgcGAgagCGCGGCG-GGGg -3'
miRNA:   3'- -GUGGUUG--CACCG-------------CUa--GUGCUGCaCCC- -5'
5178 3' -54.3 NC_001798.1 + 19276 0.67 0.944499
Target:  5'- aUACCAauacgGCGUGGUGGUgCcCGGCGaccGGGa -3'
miRNA:   3'- -GUGGU-----UGCACCGCUA-GuGCUGCa--CCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.