miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5178 3' -54.3 NC_001798.1 + 104628 1.1 0.004585
Target:  5'- gCACCAACGUGGCGAUCACGACGUGGGu -3'
miRNA:   3'- -GUGGUUGCACCGCUAGUGCUGCACCC- -5'
5178 3' -54.3 NC_001798.1 + 102410 0.8 0.326107
Target:  5'- cCACCAGCGcGGCGAUCugGGCcuccagGGGa -3'
miRNA:   3'- -GUGGUUGCaCCGCUAGugCUGca----CCC- -5'
5178 3' -54.3 NC_001798.1 + 93087 0.76 0.535382
Target:  5'- -cCCAGCGgGGCGcgCGCGACGccGGGa -3'
miRNA:   3'- guGGUUGCaCCGCuaGUGCUGCa-CCC- -5'
5178 3' -54.3 NC_001798.1 + 118671 0.76 0.545263
Target:  5'- cCGCCAGC-UGGCGcUCGCGgACGUGGc -3'
miRNA:   3'- -GUGGUUGcACCGCuAGUGC-UGCACCc -5'
5178 3' -54.3 NC_001798.1 + 92393 0.73 0.666535
Target:  5'- gGCCAACGUGGCcgcGGUCgucgggucccgcACGACGggccuugGGGg -3'
miRNA:   3'- gUGGUUGCACCG---CUAG------------UGCUGCa------CCC- -5'
5178 3' -54.3 NC_001798.1 + 51798 0.73 0.686726
Target:  5'- aCGCCAucgugcGgGUGGCGAUCaACGG-GUGGGu -3'
miRNA:   3'- -GUGGU------UgCACCGCUAG-UGCUgCACCC- -5'
5178 3' -54.3 NC_001798.1 + 52578 0.73 0.696759
Target:  5'- gGCCGACacGGUGGUCGCGuGCGUGGc -3'
miRNA:   3'- gUGGUUGcaCCGCUAGUGC-UGCACCc -5'
5178 3' -54.3 NC_001798.1 + 148280 0.73 0.706739
Target:  5'- gGCgGGCGUGGCGggCaggugugcggGCGGgGUGGGg -3'
miRNA:   3'- gUGgUUGCACCGCuaG----------UGCUgCACCC- -5'
5178 3' -54.3 NC_001798.1 + 45353 0.72 0.716656
Target:  5'- ---gGACGUGGCGAUCGCGGaGcGGGc -3'
miRNA:   3'- guggUUGCACCGCUAGUGCUgCaCCC- -5'
5178 3' -54.3 NC_001798.1 + 8888 0.72 0.736267
Target:  5'- gCGCUGGCGgagGGCGGagGCGAagGUGGGg -3'
miRNA:   3'- -GUGGUUGCa--CCGCUagUGCUg-CACCC- -5'
5178 3' -54.3 NC_001798.1 + 38279 0.72 0.740149
Target:  5'- uGCC-ACGUGGCauucagacaguacggGGggGCGACGUGGGu -3'
miRNA:   3'- gUGGuUGCACCG---------------CUagUGCUGCACCC- -5'
5178 3' -54.3 NC_001798.1 + 76771 0.72 0.75552
Target:  5'- gCGCCAAgGUGGCc--CACGACGcccGGGa -3'
miRNA:   3'- -GUGGUUgCACCGcuaGUGCUGCa--CCC- -5'
5178 3' -54.3 NC_001798.1 + 71316 0.72 0.76499
Target:  5'- uCGCCcucCGUGGUGAUCAacacgcuuacCGACGcGGGg -3'
miRNA:   3'- -GUGGuu-GCACCGCUAGU----------GCUGCaCCC- -5'
5178 3' -54.3 NC_001798.1 + 71659 0.71 0.79176
Target:  5'- uGCCGACGgaacaccUGGCGAgccugcggcgCACGcuCGUGGGg -3'
miRNA:   3'- gUGGUUGC-------ACCGCUa---------GUGCu-GCACCC- -5'
5178 3' -54.3 NC_001798.1 + 8541 0.71 0.792663
Target:  5'- aUACgGACGUGG--GUCGCGGCGaGGGg -3'
miRNA:   3'- -GUGgUUGCACCgcUAGUGCUGCaCCC- -5'
5178 3' -54.3 NC_001798.1 + 148387 0.71 0.792663
Target:  5'- gGCgGGCGUGGCGggCaggugugcggGCGGgGUGGGc -3'
miRNA:   3'- gUGgUUGCACCGCuaG----------UGCUgCACCC- -5'
5178 3' -54.3 NC_001798.1 + 95702 0.7 0.81905
Target:  5'- gGCCGGCGUcgcccgaaagcgGGCGuuUCACGGCGacgauccguuUGGGg -3'
miRNA:   3'- gUGGUUGCA------------CCGCu-AGUGCUGC----------ACCC- -5'
5178 3' -54.3 NC_001798.1 + 31337 0.7 0.81905
Target:  5'- gGCCGGCGgggGGCGcgcgcaggCGCGGCGggUGGGc -3'
miRNA:   3'- gUGGUUGCa--CCGCua------GUGCUGC--ACCC- -5'
5178 3' -54.3 NC_001798.1 + 112816 0.7 0.82752
Target:  5'- cCACCcAUGauuugGGCG-UCAgGGCGUGGGu -3'
miRNA:   3'- -GUGGuUGCa----CCGCuAGUgCUGCACCC- -5'
5178 3' -54.3 NC_001798.1 + 53962 0.7 0.82752
Target:  5'- gGCCcuGCGggcGGCGGUCAgCGACGUccuGGGc -3'
miRNA:   3'- gUGGu-UGCa--CCGCUAGU-GCUGCA---CCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.