miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5178 3' -54.3 NC_001798.1 + 19276 0.67 0.944499
Target:  5'- aUACCAauacgGCGUGGUGGUgCcCGGCGaccGGGa -3'
miRNA:   3'- -GUGGU-----UGCACCGCUA-GuGCUGCa--CCC- -5'
5178 3' -54.3 NC_001798.1 + 29891 0.67 0.944499
Target:  5'- cCACCcggcuGCGgguugggGGUGGUCGCGgGCgGUGGGc -3'
miRNA:   3'- -GUGGu----UGCa------CCGCUAGUGC-UG-CACCC- -5'
5178 3' -54.3 NC_001798.1 + 56521 0.67 0.939476
Target:  5'- aGCgGAuCGUGGCGGUgccggggcgcccgCACGAUGUcuGGGa -3'
miRNA:   3'- gUGgUU-GCACCGCUA-------------GUGCUGCA--CCC- -5'
5178 3' -54.3 NC_001798.1 + 150159 0.68 0.927003
Target:  5'- gCGCCucuucCGggGGCGGgccgccgcccccucCGCGGCGUGGGg -3'
miRNA:   3'- -GUGGuu---GCa-CCGCUa-------------GUGCUGCACCC- -5'
5178 3' -54.3 NC_001798.1 + 36586 0.68 0.907674
Target:  5'- gCGCgCGGCGgccgGGCGGgggcgCGCGGCGgccGGGc -3'
miRNA:   3'- -GUG-GUUGCa---CCGCUa----GUGCUGCa--CCC- -5'
5178 3' -54.3 NC_001798.1 + 36544 0.68 0.907674
Target:  5'- gCGCgCGGCGgccgGGCGGgggcgCGCGGCGgccGGGc -3'
miRNA:   3'- -GUG-GUUGCa---CCGCUa----GUGCUGCa--CCC- -5'
5178 3' -54.3 NC_001798.1 + 97609 0.68 0.901474
Target:  5'- gGCCGGagaGcuggGGCGAcaUCGCGACGcGGGc -3'
miRNA:   3'- gUGGUUg--Ca---CCGCU--AGUGCUGCaCCC- -5'
5178 3' -54.3 NC_001798.1 + 22111 0.69 0.895044
Target:  5'- gACCAACGgGGCGAccUCGcCGGCcccuuUGGGg -3'
miRNA:   3'- gUGGUUGCaCCGCU--AGU-GCUGc----ACCC- -5'
5178 3' -54.3 NC_001798.1 + 120358 0.69 0.895044
Target:  5'- gCGCCAGCaccugGGCGAggcugugCACGACGcagcGGGc -3'
miRNA:   3'- -GUGGUUGca---CCGCUa------GUGCUGCa---CCC- -5'
5178 3' -54.3 NC_001798.1 + 95660 0.69 0.895044
Target:  5'- cCACgCGGCGUcguucGGCGGUUuggcgGCGGCGgcgGGGg -3'
miRNA:   3'- -GUG-GUUGCA-----CCGCUAG-----UGCUGCa--CCC- -5'
5178 3' -54.3 NC_001798.1 + 139355 0.69 0.895044
Target:  5'- gGCCAugGcGGCG-UC-CGGCG-GGGa -3'
miRNA:   3'- gUGGUugCaCCGCuAGuGCUGCaCCC- -5'
5178 3' -54.3 NC_001798.1 + 53647 0.69 0.895044
Target:  5'- aCGCCGccGCgGUGGCGGgguugCGCGACGcGGc -3'
miRNA:   3'- -GUGGU--UG-CACCGCUa----GUGCUGCaCCc -5'
5178 3' -54.3 NC_001798.1 + 36503 0.69 0.881508
Target:  5'- aCGCgGGCGgccgGGCGGgggcgCGCGGCGgccGGGc -3'
miRNA:   3'- -GUGgUUGCa---CCGCUa----GUGCUGCa--CCC- -5'
5178 3' -54.3 NC_001798.1 + 104812 0.69 0.880808
Target:  5'- aACgCAACGggaGcGCGAUCGCGAucgggggaggacuCGUGGGu -3'
miRNA:   3'- gUG-GUUGCa--C-CGCUAGUGCU-------------GCACCC- -5'
5178 3' -54.3 NC_001798.1 + 106075 0.69 0.874409
Target:  5'- gGCCuuuGCGgucUGGCGGUCGCGGCGa--- -3'
miRNA:   3'- gUGGu--UGC---ACCGCUAGUGCUGCaccc -5'
5178 3' -54.3 NC_001798.1 + 96026 0.69 0.867096
Target:  5'- aCACCGGCGgggcgGGCGggCggGCGACGggcauaaagagGGGa -3'
miRNA:   3'- -GUGGUUGCa----CCGCuaG--UGCUGCa----------CCC- -5'
5178 3' -54.3 NC_001798.1 + 98630 0.69 0.867096
Target:  5'- gGgCGGCGUGGCcgcgaccGUCGCGGCGaacgGGGg -3'
miRNA:   3'- gUgGUUGCACCGc------UAGUGCUGCa---CCC- -5'
5178 3' -54.3 NC_001798.1 + 146028 0.69 0.864861
Target:  5'- aGCCAaggcgcggugggggGCGUGGUGGUgaACGAUGgGGGg -3'
miRNA:   3'- gUGGU--------------UGCACCGCUAg-UGCUGCaCCC- -5'
5178 3' -54.3 NC_001798.1 + 150413 0.69 0.859574
Target:  5'- aCACC-ACGggGGCGGcgGCGGCGcGGGg -3'
miRNA:   3'- -GUGGuUGCa-CCGCUagUGCUGCaCCC- -5'
5178 3' -54.3 NC_001798.1 + 4359 0.69 0.859574
Target:  5'- gCGCCGGCGgggGGCGcgCcgGCGGCgGUGGu -3'
miRNA:   3'- -GUGGUUGCa--CCGCuaG--UGCUG-CACCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.