miRNA display CGI


Results 1 - 20 of 201 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5178 5' -63.5 NC_001798.1 + 3252 0.65 0.626166
Target:  5'- cCCCCGcgGCgcCGUAGcCGGCgggcaccgcgcgcuCGUCGGCc -3'
miRNA:   3'- cGGGGCa-CGa-GCAUC-GCCG--------------GCGGCCG- -5'
5178 5' -63.5 NC_001798.1 + 19738 0.66 0.622304
Target:  5'- gGUCCCGcGCUCaUGGCcggagaaauguguGGCCGCagggauaggggcaggCGGCg -3'
miRNA:   3'- -CGGGGCaCGAGcAUCG-------------CCGGCG---------------GCCG- -5'
5178 5' -63.5 NC_001798.1 + 93435 0.66 0.619409
Target:  5'- uGCCCgGcacGCaCGUGGCGGCCaacccgcaGCUGGa -3'
miRNA:   3'- -CGGGgCa--CGaGCAUCGCCGG--------CGGCCg -5'
5178 5' -63.5 NC_001798.1 + 28082 0.66 0.619409
Target:  5'- gGCCgCGUcCUCGcuccuGCGG-CGCUGGCu -3'
miRNA:   3'- -CGGgGCAcGAGCau---CGCCgGCGGCCG- -5'
5178 5' -63.5 NC_001798.1 + 41458 0.66 0.619409
Target:  5'- uGCCCC--GC-CGggGGgGGCgGUCGGCg -3'
miRNA:   3'- -CGGGGcaCGaGCa-UCgCCGgCGGCCG- -5'
5178 5' -63.5 NC_001798.1 + 1345 0.66 0.619409
Target:  5'- gGCCCgCGcaGCUCc--GCcgGGCCGCCGcGCa -3'
miRNA:   3'- -CGGG-GCa-CGAGcauCG--CCGGCGGC-CG- -5'
5178 5' -63.5 NC_001798.1 + 95359 0.66 0.619409
Target:  5'- aGCUCCGgggcaucauUGCggagggCGgggcGGCGGUCGCCaGCa -3'
miRNA:   3'- -CGGGGC---------ACGa-----GCa---UCGCCGGCGGcCG- -5'
5178 5' -63.5 NC_001798.1 + 115495 0.66 0.617479
Target:  5'- aCCCCGUcgaggccGCgaaucCGUAcggggcguacgucGCGGCCccgGCCGGCc -3'
miRNA:   3'- cGGGGCA-------CGa----GCAU-------------CGCCGG---CGGCCG- -5'
5178 5' -63.5 NC_001798.1 + 39811 0.66 0.609763
Target:  5'- -gCCgGUGgUCGcgggUGGCGGaUCGUCGGCu -3'
miRNA:   3'- cgGGgCACgAGC----AUCGCC-GGCGGCCG- -5'
5178 5' -63.5 NC_001798.1 + 4191 0.66 0.609763
Target:  5'- gGUCCCGcccGCggCGUGgucuGCGG-CGCUGGCg -3'
miRNA:   3'- -CGGGGCa--CGa-GCAU----CGCCgGCGGCCG- -5'
5178 5' -63.5 NC_001798.1 + 70603 0.66 0.609763
Target:  5'- cGCCagUGUGC-CGUggAGUGGaucgaCCGCUGGCg -3'
miRNA:   3'- -CGGg-GCACGaGCA--UCGCC-----GGCGGCCG- -5'
5178 5' -63.5 NC_001798.1 + 51910 0.66 0.600132
Target:  5'- aGCCUcacggCGuUGCggccCGUGGgGGCCGCCGcCg -3'
miRNA:   3'- -CGGG-----GC-ACGa---GCAUCgCCGGCGGCcG- -5'
5178 5' -63.5 NC_001798.1 + 43658 0.66 0.600132
Target:  5'- uGCUCCGUGCUgGccgcggGGCuggGGUCGUgGGUg -3'
miRNA:   3'- -CGGGGCACGAgCa-----UCG---CCGGCGgCCG- -5'
5178 5' -63.5 NC_001798.1 + 24711 0.66 0.600132
Target:  5'- cGCgCCCGggGCccgCGggcGCGGCCGCCccgccGCa -3'
miRNA:   3'- -CG-GGGCa-CGa--GCau-CGCCGGCGGc----CG- -5'
5178 5' -63.5 NC_001798.1 + 53121 0.66 0.600132
Target:  5'- aGCUCCcUGCggcUGgcGCGGUgccugaCGCCGGCc -3'
miRNA:   3'- -CGGGGcACGa--GCauCGCCG------GCGGCCG- -5'
5178 5' -63.5 NC_001798.1 + 86092 0.66 0.600132
Target:  5'- gGCCCCGgcUGCgcgcCGccGCGGacgcCCGCCGcGCc -3'
miRNA:   3'- -CGGGGC--ACGa---GCauCGCC----GGCGGC-CG- -5'
5178 5' -63.5 NC_001798.1 + 117668 0.66 0.600132
Target:  5'- -aCCCGcggGgaCGc-GCGGCCGgCGGCg -3'
miRNA:   3'- cgGGGCa--CgaGCauCGCCGGCgGCCG- -5'
5178 5' -63.5 NC_001798.1 + 132136 0.66 0.600132
Target:  5'- gGCCCUGcGC-CGccGGgGGCCGgCgGGCg -3'
miRNA:   3'- -CGGGGCaCGaGCa-UCgCCGGC-GgCCG- -5'
5178 5' -63.5 NC_001798.1 + 101977 0.66 0.59917
Target:  5'- gGCCCCGgggggGCgaugUGcGGCGGCgGCagauagaCGGCc -3'
miRNA:   3'- -CGGGGCa----CGa---GCaUCGCCGgCG-------GCCG- -5'
5178 5' -63.5 NC_001798.1 + 121982 0.66 0.590522
Target:  5'- cGCCCCaaGCac---GCGGCCuCCGGCg -3'
miRNA:   3'- -CGGGGcaCGagcauCGCCGGcGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.