miRNA display CGI


Results 1 - 20 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5180 3' -62.6 NC_001798.1 + 152621 0.65 0.676847
Target:  5'- cCGAcGCaGAUGggaguccccccggcGCC-CCGCCGGcGCGGCc -3'
miRNA:   3'- -GCU-CG-CUAC--------------CGGaGGCGGCCcUGCCG- -5'
5180 3' -62.6 NC_001798.1 + 40253 0.65 0.676847
Target:  5'- uGGGcCGGUGGCUgcccuuauacccgcaCGaCCGGGGcCGGCu -3'
miRNA:   3'- gCUC-GCUACCGGag-------------GC-GGCCCU-GCCG- -5'
5180 3' -62.6 NC_001798.1 + 147583 0.66 0.670114
Target:  5'- aGGGUcguacaGGUGaGCUUCUGCUGaGGCGGCg -3'
miRNA:   3'- gCUCG------CUAC-CGGAGGCGGCcCUGCCG- -5'
5180 3' -62.6 NC_001798.1 + 17519 0.66 0.670114
Target:  5'- aCGuAGuCGAUGGCgCUCaagagcuGCCGGGagaccGCGGUu -3'
miRNA:   3'- -GC-UC-GCUACCG-GAGg------CGGCCC-----UGCCG- -5'
5180 3' -62.6 NC_001798.1 + 27770 0.66 0.670114
Target:  5'- cCGGGC--UGcGCacgCCaGCCGGGACGGg -3'
miRNA:   3'- -GCUCGcuAC-CGga-GG-CGGCCCUGCCg -5'
5180 3' -62.6 NC_001798.1 + 53954 0.66 0.670114
Target:  5'- -cAGUGcAUGGCC-CUGCgGGcGGCGGUc -3'
miRNA:   3'- gcUCGC-UACCGGaGGCGgCC-CUGCCG- -5'
5180 3' -62.6 NC_001798.1 + 64478 0.66 0.670114
Target:  5'- uCGuAGuCGAaGGCCgucuugaaCCGCCggaggGGGugGGCg -3'
miRNA:   3'- -GC-UC-GCUaCCGGa-------GGCGG-----CCCugCCG- -5'
5180 3' -62.6 NC_001798.1 + 70548 0.66 0.670114
Target:  5'- --cGCGcUGGaggCCGCCGGGcugcgcaccACGGCg -3'
miRNA:   3'- gcuCGCuACCggaGGCGGCCC---------UGCCG- -5'
5180 3' -62.6 NC_001798.1 + 35776 0.66 0.670114
Target:  5'- cCGGcuGCGGUgcuugGGUCUCCuucGUCGGG-CGGCg -3'
miRNA:   3'- -GCU--CGCUA-----CCGGAGG---CGGCCCuGCCG- -5'
5180 3' -62.6 NC_001798.1 + 52778 0.66 0.670114
Target:  5'- -cGGCGccccgGGCgC-CCGUgagCGGGACGGCa -3'
miRNA:   3'- gcUCGCua---CCG-GaGGCG---GCCCUGCCG- -5'
5180 3' -62.6 NC_001798.1 + 76556 0.66 0.670114
Target:  5'- -cAGCGAcgcGGCCUUCGucCCGGcGAcCGGCc -3'
miRNA:   3'- gcUCGCUa--CCGGAGGC--GGCC-CU-GCCG- -5'
5180 3' -62.6 NC_001798.1 + 24808 0.66 0.660472
Target:  5'- gGuGCuGAUGcGCCUgCGCgGGGAccugcgcguggcCGGCg -3'
miRNA:   3'- gCuCG-CUAC-CGGAgGCGgCCCU------------GCCG- -5'
5180 3' -62.6 NC_001798.1 + 43062 0.66 0.660472
Target:  5'- uGAGcCGccGGCCgagCgCGCCGGGcucgGGCg -3'
miRNA:   3'- gCUC-GCuaCCGGa--G-GCGGCCCug--CCG- -5'
5180 3' -62.6 NC_001798.1 + 70451 0.66 0.660472
Target:  5'- -uGGCGGUGGCgCUCCccgagacccCCGaGGCGGCc -3'
miRNA:   3'- gcUCGCUACCG-GAGGc--------GGCcCUGCCG- -5'
5180 3' -62.6 NC_001798.1 + 130535 0.66 0.660472
Target:  5'- -cGGCGAUGGCC-CCGa-GGuGGgGGCc -3'
miRNA:   3'- gcUCGCUACCGGaGGCggCC-CUgCCG- -5'
5180 3' -62.6 NC_001798.1 + 36399 0.66 0.660472
Target:  5'- -cGGCGccggGGCCcccCUGCCGGGcgggGCGGUg -3'
miRNA:   3'- gcUCGCua--CCGGa--GGCGGCCC----UGCCG- -5'
5180 3' -62.6 NC_001798.1 + 78952 0.66 0.660472
Target:  5'- gGGGuCGcuuUGGCCg-CGuCCGGGGgGGCg -3'
miRNA:   3'- gCUC-GCu--ACCGGagGC-GGCCCUgCCG- -5'
5180 3' -62.6 NC_001798.1 + 81069 0.66 0.660472
Target:  5'- gGAGCuuccguuuGUGGCUaCCGCgGGGgacguucucGCGGCg -3'
miRNA:   3'- gCUCGc-------UACCGGaGGCGgCCC---------UGCCG- -5'
5180 3' -62.6 NC_001798.1 + 81138 0.66 0.660472
Target:  5'- --cGCGcgGGCCaUCC-UCGGG-CGGCc -3'
miRNA:   3'- gcuCGCuaCCGG-AGGcGGCCCuGCCG- -5'
5180 3' -62.6 NC_001798.1 + 43475 0.66 0.660472
Target:  5'- gCGGGgGcgGGCgugagggCCGCCGGGGCa-- -3'
miRNA:   3'- -GCUCgCuaCCGga-----GGCGGCCCUGccg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.